Hb_168893_010

Information

Type -
Description -
Location Contig168893: 148-612
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012795mg
description hypothetical protein
nr
ID XP_010273703.1
description PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
swissprot
ID P27880
description 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1
trembl
ID H6TB47
description HSP18.1B OS=Citrullus lanatus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15644: 92-766
cDNA
(Sanger)
(ID:Location)		 011_J14.ab1: 92-763 , 035_B24.ab1: 92-743 , 041_L12.ab1: 92-745 , 043_I10.ab1: 92-766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168893_010 0.0 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
2 Hb_046198_020 0.2107878513 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000796_060 0.2133196013 - - Glycogenin-2 [Aegilops tauschii]
4 Hb_005730_100 0.2157502941 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
5 Hb_020156_060 0.2197291789 - - PREDICTED: ankyrin-1-like [Prunus mume]
6 Hb_029980_010 0.2236005564 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
7 Hb_085375_010 0.2281719384 - - protein with unknown function [Ricinus communis]
8 Hb_002890_190 0.2300352112 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
9 Hb_002374_560 0.2490820658 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
10 Hb_048207_010 0.2634883474 - - heat-shock protein, putative [Ricinus communis]
11 Hb_000853_290 0.2700815393 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
12 Hb_007382_020 0.2706811877 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
13 Hb_025194_030 0.274020781 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
14 Hb_000398_130 0.278061666 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
15 Hb_001195_190 0.2818584032 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001504_090 0.2852278696 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_006745_020 0.2857031118 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
18 Hb_029508_010 0.2885857895 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
19 Hb_000206_130 0.2900229466 - - unnamed protein product [Vitis vinifera]
20 Hb_000101_220 0.2912020534 - - anthranilate synthase component I, putative [Ricinus communis]

Gene co-expression network

sample Hb_168893_010 Hb_168893_010 Hb_046198_020 Hb_046198_020 Hb_168893_010--Hb_046198_020 Hb_000796_060 Hb_000796_060 Hb_168893_010--Hb_000796_060 Hb_005730_100 Hb_005730_100 Hb_168893_010--Hb_005730_100 Hb_020156_060 Hb_020156_060 Hb_168893_010--Hb_020156_060 Hb_029980_010 Hb_029980_010 Hb_168893_010--Hb_029980_010 Hb_085375_010 Hb_085375_010 Hb_168893_010--Hb_085375_010 Hb_000101_220 Hb_000101_220 Hb_046198_020--Hb_000101_220 Hb_001195_190 Hb_001195_190 Hb_046198_020--Hb_001195_190 Hb_011468_010 Hb_011468_010 Hb_046198_020--Hb_011468_010 Hb_046198_020--Hb_000796_060 Hb_007382_020 Hb_007382_020 Hb_046198_020--Hb_007382_020 Hb_048207_010 Hb_048207_010 Hb_000796_060--Hb_048207_010 Hb_000796_060--Hb_005730_100 Hb_001104_040 Hb_001104_040 Hb_000796_060--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_000796_060--Hb_001279_230 Hb_000398_130 Hb_000398_130 Hb_000796_060--Hb_000398_130 Hb_002890_190 Hb_002890_190 Hb_005730_100--Hb_002890_190 Hb_000891_080 Hb_000891_080 Hb_005730_100--Hb_000891_080 Hb_005730_100--Hb_029980_010 Hb_000488_030 Hb_000488_030 Hb_005730_100--Hb_000488_030 Hb_005730_100--Hb_001104_040 Hb_005730_100--Hb_000398_130 Hb_000205_150 Hb_000205_150 Hb_020156_060--Hb_000205_150 Hb_010174_210 Hb_010174_210 Hb_020156_060--Hb_010174_210 Hb_001621_160 Hb_001621_160 Hb_020156_060--Hb_001621_160 Hb_020156_060--Hb_029980_010 Hb_011639_080 Hb_011639_080 Hb_020156_060--Hb_011639_080 Hb_029980_010--Hb_002890_190 Hb_029980_010--Hb_000891_080 Hb_000046_220 Hb_000046_220 Hb_029980_010--Hb_000046_220 Hb_029980_010--Hb_000488_030 Hb_097433_010 Hb_097433_010 Hb_085375_010--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_085375_010--Hb_000008_230 Hb_004712_110 Hb_004712_110 Hb_085375_010--Hb_004712_110 Hb_003125_140 Hb_003125_140 Hb_085375_010--Hb_003125_140 Hb_000206_130 Hb_000206_130 Hb_085375_010--Hb_000206_130 Hb_000580_130 Hb_000580_130 Hb_085375_010--Hb_000580_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.70245 40.415 41.2744 29.6545 330.063 62.4812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.606473 0.119098 1.78713 5.03852 12.2544

CAGE analysis