Hb_168893_030

Information

Type -
Description -
Location Contig168893: 11357-16577
Sequence    

Annotation

kegg
ID rcu:RCOM_0367530
description Spotted leaf protein, putative
nr
ID XP_012065019.1
description PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID A0A067LAL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05690 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15650: 14401-15071 , PASA_asmbl_15651: 11457-16781
cDNA
(Sanger)
(ID:Location)		 051_I20.ab1: 11459-14841

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168893_030 0.0 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
2 Hb_000826_030 0.090198342 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
3 Hb_012438_030 0.0906664134 - - PREDICTED: protein sym-1 [Jatropha curcas]
4 Hb_004324_360 0.0911542063 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
5 Hb_002411_190 0.0919539175 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_002675_250 0.0961099967 - - aspartate aminotransferase, putative [Ricinus communis]
7 Hb_002684_020 0.096226406 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
8 Hb_009476_130 0.0974092514 - - hypothetical protein VITISV_005430 [Vitis vinifera]
9 Hb_000724_020 0.0982011464 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
10 Hb_000155_170 0.1025738591 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
11 Hb_001377_040 0.104584979 - - chitinase, putative [Ricinus communis]
12 Hb_000748_090 0.1057087034 - - glucose inhibited division protein A, putative [Ricinus communis]
13 Hb_007012_030 0.1059027761 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
14 Hb_001158_160 0.1068212435 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
15 Hb_002600_070 0.1069758659 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
16 Hb_000453_030 0.1077932384 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
17 Hb_087313_010 0.1080648607 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000320_190 0.1082562035 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_009158_060 0.1084901918 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
20 Hb_000703_290 0.1089593266 - - aldo/keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_168893_030 Hb_168893_030 Hb_000826_030 Hb_000826_030 Hb_168893_030--Hb_000826_030 Hb_012438_030 Hb_012438_030 Hb_168893_030--Hb_012438_030 Hb_004324_360 Hb_004324_360 Hb_168893_030--Hb_004324_360 Hb_002411_190 Hb_002411_190 Hb_168893_030--Hb_002411_190 Hb_002675_250 Hb_002675_250 Hb_168893_030--Hb_002675_250 Hb_002684_020 Hb_002684_020 Hb_168893_030--Hb_002684_020 Hb_001158_160 Hb_001158_160 Hb_000826_030--Hb_001158_160 Hb_002876_300 Hb_002876_300 Hb_000826_030--Hb_002876_300 Hb_030414_040 Hb_030414_040 Hb_000826_030--Hb_030414_040 Hb_010174_090 Hb_010174_090 Hb_000826_030--Hb_010174_090 Hb_000826_030--Hb_012438_030 Hb_000364_100 Hb_000364_100 Hb_000826_030--Hb_000364_100 Hb_087313_010 Hb_087313_010 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_001635_210 Hb_001635_210 Hb_002411_190--Hb_001635_210 Hb_007012_030 Hb_007012_030 Hb_002411_190--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_002411_190--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_002411_190--Hb_009158_060 Hb_000748_090 Hb_000748_090 Hb_002411_190--Hb_000748_090 Hb_000529_180 Hb_000529_180 Hb_002675_250--Hb_000529_180 Hb_010863_050 Hb_010863_050 Hb_002675_250--Hb_010863_050 Hb_002675_250--Hb_002684_020 Hb_002006_150 Hb_002006_150 Hb_002675_250--Hb_002006_150 Hb_002675_250--Hb_004324_360 Hb_002675_250--Hb_001488_020 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_002684_020--Hb_012438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59712 9.63456 21.1871 11.0529 7.19422 8.87763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44406 3.37027 6.46709 8.84863 17.6481

CAGE analysis