Hb_168909_010

Information

Type -
Description -
Location Contig168909: 498-1038
Sequence    

Annotation

kegg
ID bvg:104886355
description uncharacterized LOC104886355
nr
ID XP_012079787.1
description PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B2QIK8
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_049118 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168909_010 0.0 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
2 Hb_114121_010 0.0540428603 - - -
3 Hb_000280_120 0.0660064459 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
4 Hb_000243_050 0.0665428085 - - ADP-ribosylation factor, putative [Ricinus communis]
5 Hb_002733_050 0.0703253398 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_001301_070 0.0794660186 - - -
7 Hb_179183_010 0.0881264179 - - RALF-LIKE 32 family protein [Populus trichocarpa]
8 Hb_138667_010 0.0932595121 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_000192_060 0.1006847097 - - -
10 Hb_006013_030 0.1008772819 - - -
11 Hb_000209_010 0.1141897347 - - -
12 Hb_151411_010 0.1189727117 - - -
13 Hb_003938_100 0.1195026191 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000916_010 0.1198771413 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_039547_010 0.1205726243 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
16 Hb_008755_020 0.1216114916 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_028872_040 0.1378300263 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_006120_160 0.1458467493 - - -
19 Hb_002585_060 0.1489490889 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
20 Hb_056506_080 0.1512949019 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_168909_010 Hb_168909_010 Hb_114121_010 Hb_114121_010 Hb_168909_010--Hb_114121_010 Hb_000280_120 Hb_000280_120 Hb_168909_010--Hb_000280_120 Hb_000243_050 Hb_000243_050 Hb_168909_010--Hb_000243_050 Hb_002733_050 Hb_002733_050 Hb_168909_010--Hb_002733_050 Hb_001301_070 Hb_001301_070 Hb_168909_010--Hb_001301_070 Hb_179183_010 Hb_179183_010 Hb_168909_010--Hb_179183_010 Hb_114121_010--Hb_002733_050 Hb_008755_020 Hb_008755_020 Hb_114121_010--Hb_008755_020 Hb_114121_010--Hb_179183_010 Hb_006013_030 Hb_006013_030 Hb_114121_010--Hb_006013_030 Hb_114121_010--Hb_000280_120 Hb_138667_010 Hb_138667_010 Hb_000280_120--Hb_138667_010 Hb_000280_120--Hb_000243_050 Hb_028872_040 Hb_028872_040 Hb_000280_120--Hb_028872_040 Hb_003938_100 Hb_003938_100 Hb_000280_120--Hb_003938_100 Hb_000280_120--Hb_006013_030 Hb_000243_050--Hb_138667_010 Hb_000243_050--Hb_003938_100 Hb_000243_050--Hb_001301_070 Hb_000243_050--Hb_028872_040 Hb_002733_050--Hb_006013_030 Hb_002733_050--Hb_008755_020 Hb_002733_050--Hb_000280_120 Hb_020400_010 Hb_020400_010 Hb_002733_050--Hb_020400_010 Hb_000192_060 Hb_000192_060 Hb_001301_070--Hb_000192_060 Hb_151411_010 Hb_151411_010 Hb_001301_070--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_001301_070--Hb_000209_010 Hb_000916_010 Hb_000916_010 Hb_001301_070--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_001301_070--Hb_039547_010 Hb_006120_160 Hb_006120_160 Hb_179183_010--Hb_006120_160 Hb_101034_010 Hb_101034_010 Hb_179183_010--Hb_101034_010 Hb_159124_010 Hb_159124_010 Hb_179183_010--Hb_159124_010 Hb_179183_010--Hb_000916_010 Hb_179183_010--Hb_039547_010 Hb_005432_020 Hb_005432_020 Hb_179183_010--Hb_005432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.191027 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.153504 0.353179

CAGE analysis