Hb_168918_020

Information

Type -
Description -
Location Contig168918: 19702-23275
Sequence    

Annotation

kegg
ID rcu:RCOM_0867160
description pectin acetylesterase, putative
nr
ID XP_002519911.1
description pectin acetylesterase, putative [Ricinus communis]
swissprot
ID Q6DBP4
description Pectin acetylesterase 8 OS=Arabidopsis thaliana GN=PAE8 PE=2 SV=1
trembl
ID B9S1P6
description Pectin acetylesterase, putative OS=Ricinus communis GN=RCOM_0867160 PE=4 SV=1
Gene Ontology
ID GO:0052689
description protein notum homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15672: 18720-24116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168918_020 0.0 - - pectin acetylesterase, putative [Ricinus communis]
2 Hb_012340_030 0.0501501444 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
3 Hb_000107_390 0.0555929084 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
4 Hb_000017_120 0.0742099273 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
5 Hb_002997_170 0.0749085975 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
6 Hb_001776_110 0.0761884848 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
7 Hb_118419_020 0.0772350434 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
8 Hb_000905_190 0.0798323933 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
9 Hb_000329_690 0.0813449645 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
10 Hb_002942_020 0.0817651465 - - nucleotide binding protein, putative [Ricinus communis]
11 Hb_000538_020 0.0821155876 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
12 Hb_005527_050 0.0828095329 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
13 Hb_011224_080 0.0845860034 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
14 Hb_002272_250 0.0854619132 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003609_040 0.0857894209 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
16 Hb_150069_020 0.086310013 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
17 Hb_001214_130 0.0873434985 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
18 Hb_000172_370 0.0880217151 - - -
19 Hb_006569_020 0.0889509365 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
20 Hb_001741_140 0.0889842633 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_168918_020 Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_012340_030--Hb_000107_390 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_012340_030--Hb_118419_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_000017_120--Hb_002272_250 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_000905_190 Hb_000905_190 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_002997_170--Hb_012340_030 Hb_003540_040 Hb_003540_040 Hb_001776_110--Hb_003540_040 Hb_006569_020 Hb_006569_020 Hb_001776_110--Hb_006569_020 Hb_010436_070 Hb_010436_070 Hb_001776_110--Hb_010436_070 Hb_004662_030 Hb_004662_030 Hb_001776_110--Hb_004662_030 Hb_002097_110 Hb_002097_110 Hb_001776_110--Hb_002097_110 Hb_000029_030 Hb_000029_030 Hb_001776_110--Hb_000029_030 Hb_118419_020--Hb_010436_070 Hb_000317_430 Hb_000317_430 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
77.6512 12.7133 15.7525 10.4076 65.8498 66.3671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.9135 59.7504 47.1793 12.9057 13.3265

CAGE analysis