Hb_168978_010

Information

Type -
Description -
Location Contig168978: 28512-29888
Sequence    

Annotation

kegg
ID tcc:TCM_034567
description Xin actin-binding repeat-containing protein 1, putative
nr
ID XP_012068078.1
description PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15931 PE=4 SV=1
Gene Ontology
ID GO:0005515
description xin actin-binding repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 026_I01.ab1: 28370-28958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168978_010 0.0 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
2 Hb_001511_060 0.0542931492 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
3 Hb_000359_060 0.0556684501 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
4 Hb_000260_350 0.0582547057 - - conserved hypothetical protein [Ricinus communis]
5 Hb_093458_040 0.063504014 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
6 Hb_149985_010 0.0647942806 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
7 Hb_000030_030 0.0648715026 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
8 Hb_004990_010 0.0655909288 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
9 Hb_006570_080 0.0661136081 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
10 Hb_001278_100 0.0662568025 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
11 Hb_000510_300 0.066542353 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_002936_010 0.0666274122 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
13 Hb_004108_220 0.0678989565 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
14 Hb_008725_230 0.0679106967 - - PREDICTED: CTP synthase [Jatropha curcas]
15 Hb_000028_370 0.0679139612 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
16 Hb_012022_040 0.0704247759 - - Protein SIS1, putative [Ricinus communis]
17 Hb_002301_150 0.0712926578 - - Drought-responsive family protein [Theobroma cacao]
18 Hb_001359_050 0.0718358222 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000890_150 0.0727206629 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
20 Hb_001473_160 0.0730261445 - - Vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_168978_010 Hb_168978_010 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000359_060 Hb_000359_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030 Hb_001511_060--Hb_000260_350 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_000359_060--Hb_149985_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_005846_040 Hb_005846_040 Hb_000030_030--Hb_005846_040 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_003502_060 Hb_003502_060 Hb_000030_030--Hb_003502_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000030_030--Hb_003151_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71451 10.9338 10.312 17.5716 8.91321 9.05915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7593 14.0797 11.7331 11.5685 8.93333

CAGE analysis