Hb_169246_010

Information

Type -
Description -
Location Contig169246: 4703-6054
Sequence    

Annotation

kegg
ID rcu:RCOM_1154340
description hypothetical protein
nr
ID XP_002524936.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG17
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1154340 PE=4 SV=1
Gene Ontology
ID GO:0009793
description maternal effect embryo arrest isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15749: 4925-5989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169246_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007617_020 0.1103525831 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002374_490 0.1118568611 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001623_330 0.12021579 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
5 Hb_000866_300 0.1231848353 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
6 Hb_011805_080 0.1239408841 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
7 Hb_005031_070 0.1248320055 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
8 Hb_007747_090 0.1294241974 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
9 Hb_000260_050 0.1303955389 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
10 Hb_003001_060 0.1327024044 - - wound-responsive family protein [Populus trichocarpa]
11 Hb_001951_110 0.134960698 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
12 Hb_000045_130 0.1352238111 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
13 Hb_001454_330 0.1380104842 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
14 Hb_004012_010 0.1393336787 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
15 Hb_000318_380 0.1400283818 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
16 Hb_028486_040 0.1408892456 - - 40S ribosomal protein S14, putative [Ricinus communis]
17 Hb_000483_160 0.1415521385 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
18 Hb_003029_080 0.141761828 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
19 Hb_001369_650 0.1423044411 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
20 Hb_024835_030 0.1451256745 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]

Gene co-expression network

sample Hb_169246_010 Hb_169246_010 Hb_007617_020 Hb_007617_020 Hb_169246_010--Hb_007617_020 Hb_002374_490 Hb_002374_490 Hb_169246_010--Hb_002374_490 Hb_001623_330 Hb_001623_330 Hb_169246_010--Hb_001623_330 Hb_000866_300 Hb_000866_300 Hb_169246_010--Hb_000866_300 Hb_011805_080 Hb_011805_080 Hb_169246_010--Hb_011805_080 Hb_005031_070 Hb_005031_070 Hb_169246_010--Hb_005031_070 Hb_007617_020--Hb_011805_080 Hb_000487_250 Hb_000487_250 Hb_007617_020--Hb_000487_250 Hb_001946_210 Hb_001946_210 Hb_007617_020--Hb_001946_210 Hb_002311_350 Hb_002311_350 Hb_007617_020--Hb_002311_350 Hb_002811_230 Hb_002811_230 Hb_007617_020--Hb_002811_230 Hb_002307_030 Hb_002307_030 Hb_002374_490--Hb_002307_030 Hb_004297_100 Hb_004297_100 Hb_002374_490--Hb_004297_100 Hb_024835_030 Hb_024835_030 Hb_002374_490--Hb_024835_030 Hb_004645_050 Hb_004645_050 Hb_002374_490--Hb_004645_050 Hb_007747_090 Hb_007747_090 Hb_002374_490--Hb_007747_090 Hb_000156_130 Hb_000156_130 Hb_002374_490--Hb_000156_130 Hb_001369_650 Hb_001369_650 Hb_001623_330--Hb_001369_650 Hb_001623_330--Hb_000866_300 Hb_003001_060 Hb_003001_060 Hb_001623_330--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_001623_330--Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_001623_330--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_001623_330--Hb_000045_130 Hb_001951_110 Hb_001951_110 Hb_000866_300--Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_000866_300--Hb_001804_040 Hb_004204_030 Hb_004204_030 Hb_000866_300--Hb_004204_030 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_011805_080--Hb_003001_060 Hb_011805_080--Hb_001369_650 Hb_002893_060 Hb_002893_060 Hb_011805_080--Hb_002893_060 Hb_011805_080--Hb_007747_090 Hb_003878_190 Hb_003878_190 Hb_011805_080--Hb_003878_190 Hb_004223_230 Hb_004223_230 Hb_005031_070--Hb_004223_230 Hb_004012_010 Hb_004012_010 Hb_005031_070--Hb_004012_010 Hb_002783_230 Hb_002783_230 Hb_005031_070--Hb_002783_230 Hb_000339_070 Hb_000339_070 Hb_005031_070--Hb_000339_070 Hb_002918_280 Hb_002918_280 Hb_005031_070--Hb_002918_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
142.817 57.6809 15.6846 12.6775 121.783 110.448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.771 253.655 69.8524 58.2281 0.721147

CAGE analysis