Hb_169574_010

Information

Type -
Description -
Location Contig169574: 225-835
Sequence    

Annotation

kegg
ID pda:103699534
description uncharacterized LOC103699534
nr
ID XP_009630421.1
description PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9FT37
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_21231 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169574_010 0.0 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
2 Hb_048874_010 0.0025465204 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
3 Hb_005799_040 0.008826202 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
4 Hb_008246_050 0.0088723965 - - -
5 Hb_127993_010 0.0471730544 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
6 Hb_054362_010 0.0697751738 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
7 Hb_162126_010 0.0720145793 - - -
8 Hb_000430_010 0.0912884889 - - -
9 Hb_125847_010 0.1073813133 - - -
10 Hb_005285_010 0.1570601313 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_168311_010 0.1641732943 - - -
12 Hb_000139_440 0.1865676813 - - unnamed protein product [Coffea canephora]
13 Hb_000590_020 0.1971857587 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
14 Hb_047040_010 0.2017295574 - - integrase [Gossypium herbaceum]
15 Hb_001956_030 0.206639946 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
16 Hb_022206_060 0.2098358222 - - -
17 Hb_089173_010 0.2116068518 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
18 Hb_090826_010 0.2141051145 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
19 Hb_000876_040 0.2169643958 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
20 Hb_030928_010 0.218714677 - - -

Gene co-expression network

sample Hb_169574_010 Hb_169574_010 Hb_048874_010 Hb_048874_010 Hb_169574_010--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_169574_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_169574_010--Hb_008246_050 Hb_127993_010 Hb_127993_010 Hb_169574_010--Hb_127993_010 Hb_054362_010 Hb_054362_010 Hb_169574_010--Hb_054362_010 Hb_162126_010 Hb_162126_010 Hb_169574_010--Hb_162126_010 Hb_048874_010--Hb_005799_040 Hb_048874_010--Hb_008246_050 Hb_048874_010--Hb_127993_010 Hb_048874_010--Hb_162126_010 Hb_048874_010--Hb_054362_010 Hb_005799_040--Hb_008246_050 Hb_005799_040--Hb_127993_010 Hb_005799_040--Hb_162126_010 Hb_005799_040--Hb_054362_010 Hb_008246_050--Hb_127993_010 Hb_008246_050--Hb_162126_010 Hb_008246_050--Hb_054362_010 Hb_127993_010--Hb_054362_010 Hb_127993_010--Hb_162126_010 Hb_054362_010--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_162126_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_162126_010--Hb_125847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.602177 0.429227 0

CAGE analysis