Hb_169597_010

Information

Type -
Description -
Location Contig169597: 136-390
Sequence    

Annotation

kegg
ID bvg:104903465
description uncharacterized LOC104903465
nr
ID XP_010689803.1
description PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID G7LEA2
description Uncharacterized protein OS=Medicago truncatula GN=MTR_8g107770 PE=4 SV=2
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC104903465

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169597_010 0.0 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
2 Hb_003927_030 0.0052082665 - - unnamed protein product [Coffea canephora]
3 Hb_000052_030 0.0065477009 - - -
4 Hb_000946_020 0.0250587375 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
5 Hb_002570_050 0.0298426326 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
6 Hb_093039_010 0.0482000883 - - JHL22C18.10 [Jatropha curcas]
7 Hb_000190_130 0.0518617303 - - cysteine protease inhibitor [Populus tremula]
8 Hb_006261_010 0.0599565118 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
9 Hb_007757_090 0.0663602479 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
10 Hb_003780_010 0.0683939437 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000574_490 0.0740737864 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
12 Hb_005625_050 0.0741417265 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
13 Hb_006907_110 0.0818874931 - - -
14 Hb_000575_050 0.0827853497 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
15 Hb_021888_160 0.0851326556 - - -
16 Hb_000501_080 0.0928558457 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
17 Hb_174662_020 0.0931860797 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
18 Hb_019299_050 0.0959113853 - - -
19 Hb_007810_080 0.0981610231 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
20 Hb_002110_220 0.1217315113 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_169597_010 Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_169597_010--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_169597_010--Hb_000052_030 Hb_000946_020 Hb_000946_020 Hb_169597_010--Hb_000946_020 Hb_002570_050 Hb_002570_050 Hb_169597_010--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_169597_010--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_169597_010--Hb_000190_130 Hb_003927_030--Hb_000052_030 Hb_003927_030--Hb_002570_050 Hb_003927_030--Hb_000946_020 Hb_003927_030--Hb_093039_010 Hb_003927_030--Hb_000190_130 Hb_000052_030--Hb_002570_050 Hb_000052_030--Hb_000946_020 Hb_000052_030--Hb_093039_010 Hb_000052_030--Hb_000190_130 Hb_006261_010 Hb_006261_010 Hb_000946_020--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_000946_020--Hb_007757_090 Hb_005625_050 Hb_005625_050 Hb_000946_020--Hb_005625_050 Hb_002570_050--Hb_093039_010 Hb_002570_050--Hb_000190_130 Hb_003780_010 Hb_003780_010 Hb_002570_050--Hb_003780_010 Hb_093039_010--Hb_000190_130 Hb_093039_010--Hb_003780_010 Hb_000574_490 Hb_000574_490 Hb_093039_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_093039_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_093039_010--Hb_000575_050 Hb_000190_130--Hb_003780_010 Hb_000190_130--Hb_000574_490 Hb_000190_130--Hb_006907_110 Hb_000190_130--Hb_000575_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.874665 0.64536

CAGE analysis