Hb_169620_010

Information

Type -
Description -
Location Contig169620: 200-988
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID XP_012089461.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067FKT2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022501mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169620_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
2 Hb_004648_100 0.1342488126 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
3 Hb_066320_010 0.1485037845 - - hypothetical protein VITISV_027639 [Vitis vinifera]
4 Hb_060909_010 0.1492615559 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
5 Hb_163658_010 0.1493104905 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_000544_020 0.1521260176 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
7 Hb_001408_150 0.1543336358 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
8 Hb_010381_110 0.1551464086 - - PRA1 family protein [Theobroma cacao]
9 Hb_003371_260 0.1566382527 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
10 Hb_002119_070 0.1599860302 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_003371_210 0.1601043526 - - unnamed protein product [Vitis vinifera]
12 Hb_001879_050 0.1619053434 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_010605_010 0.165603361 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
14 Hb_000778_020 0.1666036226 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
15 Hb_007253_040 0.1749438309 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
16 Hb_000984_100 0.17522142 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_001148_040 0.1759504358 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
18 Hb_000532_130 0.1761023453 - - hypothetical protein [Anabaena sp. PCC 7108]
19 Hb_000450_180 0.1793779216 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_062479_010 0.1815980978 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_169620_010 Hb_169620_010 Hb_004648_100 Hb_004648_100 Hb_169620_010--Hb_004648_100 Hb_066320_010 Hb_066320_010 Hb_169620_010--Hb_066320_010 Hb_060909_010 Hb_060909_010 Hb_169620_010--Hb_060909_010 Hb_163658_010 Hb_163658_010 Hb_169620_010--Hb_163658_010 Hb_000544_020 Hb_000544_020 Hb_169620_010--Hb_000544_020 Hb_001408_150 Hb_001408_150 Hb_169620_010--Hb_001408_150 Hb_004648_100--Hb_060909_010 Hb_004648_100--Hb_000544_020 Hb_057079_020 Hb_057079_020 Hb_004648_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_014361_130 Hb_014361_130 Hb_066320_010--Hb_014361_130 Hb_003371_260 Hb_003371_260 Hb_066320_010--Hb_003371_260 Hb_003371_210 Hb_003371_210 Hb_066320_010--Hb_003371_210 Hb_000101_140 Hb_000101_140 Hb_066320_010--Hb_000101_140 Hb_017604_020 Hb_017604_020 Hb_066320_010--Hb_017604_020 Hb_060909_010--Hb_001408_150 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_163658_010--Hb_060909_010 Hb_010605_010 Hb_010605_010 Hb_163658_010--Hb_010605_010 Hb_163658_010--Hb_000544_020 Hb_163658_010--Hb_004648_100 Hb_163658_010--Hb_001408_150 Hb_158696_010 Hb_158696_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_001248_110 Hb_001248_110 Hb_000544_020--Hb_001248_110 Hb_000544_020--Hb_000532_130 Hb_000778_020 Hb_000778_020 Hb_001408_150--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_001408_150--Hb_008175_030 Hb_002739_060 Hb_002739_060 Hb_001408_150--Hb_002739_060 Hb_001408_150--Hb_000532_130 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202218 8.21037 0.738771 3.80917 0.0580102 1.34816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0540495 0.292932 3.7647 1.30015

CAGE analysis