Hb_169631_010

Information

Type -
Description -
Location Contig169631: 470-2379
Sequence    

Annotation

kegg
ID rcu:RCOM_0885930
description MADS-box transcription factor, putative
nr
ID XP_002522654.1
description MADS-box transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9I5
description MADS-box transcription factor, putative OS=Ricinus communis GN=RCOM_0885930 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein svp-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169631_010 0.0 - - MADS-box transcription factor, putative [Ricinus communis]
2 Hb_004157_100 0.0780648943 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_000249_070 0.0950238565 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
4 Hb_002660_150 0.0975819877 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
5 Hb_000107_230 0.100465746 - - unknown [Medicago truncatula]
6 Hb_004052_040 0.102574 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_009049_020 0.1047704764 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
8 Hb_000107_080 0.1078065522 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
9 Hb_045770_010 0.1104288022 - - ER lumen protein retaining receptor [Populus trichocarpa]
10 Hb_054745_010 0.1123638087 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003582_080 0.1137183957 - - iaa-alanine resistance protein, putative [Ricinus communis]
12 Hb_008120_010 0.1164077016 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
13 Hb_059480_010 0.1170808421 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_006153_070 0.1223647692 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_003688_090 0.1226580481 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
16 Hb_003929_170 0.1253194874 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
17 Hb_002445_060 0.1257592822 - - arf gtpase-activating protein, putative [Ricinus communis]
18 Hb_000207_150 0.1262673389 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
19 Hb_008970_030 0.1271518993 - - arf gtpase-activating protein, putative [Ricinus communis]
20 Hb_006588_170 0.1271933231 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]

Gene co-expression network

sample Hb_169631_010 Hb_169631_010 Hb_004157_100 Hb_004157_100 Hb_169631_010--Hb_004157_100 Hb_000249_070 Hb_000249_070 Hb_169631_010--Hb_000249_070 Hb_002660_150 Hb_002660_150 Hb_169631_010--Hb_002660_150 Hb_000107_230 Hb_000107_230 Hb_169631_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_169631_010--Hb_004052_040 Hb_009049_020 Hb_009049_020 Hb_169631_010--Hb_009049_020 Hb_004157_100--Hb_000107_230 Hb_054745_010 Hb_054745_010 Hb_004157_100--Hb_054745_010 Hb_000676_080 Hb_000676_080 Hb_004157_100--Hb_000676_080 Hb_000004_020 Hb_000004_020 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_002685_110 Hb_002685_110 Hb_000249_070--Hb_002685_110 Hb_002235_170 Hb_002235_170 Hb_000249_070--Hb_002235_170 Hb_002445_120 Hb_002445_120 Hb_000249_070--Hb_002445_120 Hb_000107_200 Hb_000107_200 Hb_000249_070--Hb_000107_200 Hb_022833_100 Hb_022833_100 Hb_000249_070--Hb_022833_100 Hb_000331_370 Hb_000331_370 Hb_002660_150--Hb_000331_370 Hb_052805_010 Hb_052805_010 Hb_002660_150--Hb_052805_010 Hb_000172_510 Hb_000172_510 Hb_002660_150--Hb_000172_510 Hb_004032_030 Hb_004032_030 Hb_002660_150--Hb_004032_030 Hb_010407_140 Hb_010407_140 Hb_002660_150--Hb_010407_140 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170 Hb_006478_020 Hb_006478_020 Hb_004052_040--Hb_006478_020 Hb_004052_040--Hb_000249_070 Hb_059480_010 Hb_059480_010 Hb_004052_040--Hb_059480_010 Hb_004191_020 Hb_004191_020 Hb_004052_040--Hb_004191_020 Hb_004052_040--Hb_002685_110 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_002398_030 Hb_002398_030 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_008120_010 Hb_008120_010 Hb_009049_020--Hb_008120_010 Hb_058999_030 Hb_058999_030 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2439 9.31398 20.8975 38.3461 9.71562 31.3486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7548 13.5258 14.0916 15.9894 16.3888

CAGE analysis