Hb_169948_010

Information

Type -
Description -
Location Contig169948: 2899-7352
Sequence    

Annotation

kegg
ID mdm:103418951
description uncharacterized LOC103418951
nr
ID CAN79826.1
description hypothetical protein VITISV_006524 [Vitis vinifera]
swissprot
ID P92519
description Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1
trembl
ID A5C982
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006524 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169948_010 0.0 - - hypothetical protein VITISV_006524 [Vitis vinifera]
2 Hb_066293_010 0.0898545355 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_125961_010 0.1135633372 - - ATP binding protein, putative [Ricinus communis]
4 Hb_004934_130 0.1215652421 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
5 Hb_057880_020 0.122669778 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
6 Hb_000462_160 0.1245654102 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_027337_130 0.130602454 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
8 Hb_008461_070 0.1310176272 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
9 Hb_003226_230 0.134071823 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
10 Hb_016734_040 0.1351462679 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_004117_320 0.1362639257 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
12 Hb_000347_320 0.136324495 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
13 Hb_002713_060 0.1367413758 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
14 Hb_004291_050 0.1380344945 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
15 Hb_000920_100 0.1400516257 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_000120_480 0.1406618816 - - -
17 Hb_001269_540 0.1415184237 - - hypothetical protein VITISV_038016 [Vitis vinifera]
18 Hb_162676_010 0.1419640836 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002226_090 0.1439409639 - - Stachyose synthase precursor, putative [Ricinus communis]
20 Hb_005057_030 0.1443117604 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_169948_010 Hb_169948_010 Hb_066293_010 Hb_066293_010 Hb_169948_010--Hb_066293_010 Hb_125961_010 Hb_125961_010 Hb_169948_010--Hb_125961_010 Hb_004934_130 Hb_004934_130 Hb_169948_010--Hb_004934_130 Hb_057880_020 Hb_057880_020 Hb_169948_010--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_169948_010--Hb_000462_160 Hb_027337_130 Hb_027337_130 Hb_169948_010--Hb_027337_130 Hb_066293_010--Hb_125961_010 Hb_003226_230 Hb_003226_230 Hb_066293_010--Hb_003226_230 Hb_000120_480 Hb_000120_480 Hb_066293_010--Hb_000120_480 Hb_162676_010 Hb_162676_010 Hb_066293_010--Hb_162676_010 Hb_066293_010--Hb_057880_020 Hb_125961_010--Hb_003226_230 Hb_125961_010--Hb_162676_010 Hb_125961_010--Hb_000120_480 Hb_005057_030 Hb_005057_030 Hb_125961_010--Hb_005057_030 Hb_008461_070 Hb_008461_070 Hb_125961_010--Hb_008461_070 Hb_002814_010 Hb_002814_010 Hb_004934_130--Hb_002814_010 Hb_002713_060 Hb_002713_060 Hb_004934_130--Hb_002713_060 Hb_000920_100 Hb_000920_100 Hb_004934_130--Hb_000920_100 Hb_004934_130--Hb_066293_010 Hb_002226_090 Hb_002226_090 Hb_004934_130--Hb_002226_090 Hb_001541_280 Hb_001541_280 Hb_004934_130--Hb_001541_280 Hb_057880_020--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_057880_020--Hb_020367_040 Hb_002620_040 Hb_002620_040 Hb_057880_020--Hb_002620_040 Hb_000139_030 Hb_000139_030 Hb_057880_020--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_057880_020--Hb_048755_030 Hb_000462_160--Hb_002620_040 Hb_000462_160--Hb_020367_040 Hb_000462_160--Hb_000139_030 Hb_000462_160--Hb_048755_030 Hb_000462_160--Hb_002226_090 Hb_188075_010 Hb_188075_010 Hb_027337_130--Hb_188075_010 Hb_002636_070 Hb_002636_070 Hb_027337_130--Hb_002636_070 Hb_000574_340 Hb_000574_340 Hb_027337_130--Hb_000574_340 Hb_004291_050 Hb_004291_050 Hb_027337_130--Hb_004291_050 Hb_027337_130--Hb_008461_070 Hb_000033_010 Hb_000033_010 Hb_027337_130--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00930938 0.0722179 0.0574664 0.13458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0264678 0.3875

CAGE analysis