Hb_170077_020

Information

Type -
Description -
Location Contig170077: 22700-26914
Sequence    

Annotation

kegg
ID rcu:RCOM_0926750
description hypothetical protein
nr
ID XP_012078652.1
description PREDICTED: probable serine incorporator [Jatropha curcas]
swissprot
ID Q54UF8
description Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1
trembl
ID A0A067KJ77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13230 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15908: 22392-28269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170077_020 0.0 - - PREDICTED: probable serine incorporator [Jatropha curcas]
2 Hb_000813_020 0.0557670515 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
3 Hb_003849_170 0.0698299294 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
4 Hb_001257_140 0.0816757723 - - Gb:AAF02129.1, putative [Theobroma cacao]
5 Hb_005648_020 0.085094543 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
6 Hb_000352_360 0.0873184998 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
7 Hb_003607_080 0.0896555378 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
8 Hb_000334_090 0.0924806091 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
9 Hb_003090_220 0.0960772497 - - PREDICTED: copper transporter 4 [Jatropha curcas]
10 Hb_002616_020 0.0986025238 - - PREDICTED: peroxidase 3 [Jatropha curcas]
11 Hb_005144_150 0.1023988213 - - hypothetical protein VITISV_013572 [Vitis vinifera]
12 Hb_000834_130 0.1065592459 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010863_020 0.1099501138 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
14 Hb_008021_050 0.1101309412 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002304_110 0.1123822728 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
16 Hb_000093_010 0.1129775301 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
17 Hb_001789_230 0.1142657809 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003858_070 0.1145158571 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
19 Hb_000207_060 0.1152917796 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
20 Hb_008731_010 0.1156466403 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]

Gene co-expression network

sample Hb_170077_020 Hb_170077_020 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_003849_170 Hb_003849_170 Hb_170077_020--Hb_003849_170 Hb_001257_140 Hb_001257_140 Hb_170077_020--Hb_001257_140 Hb_005648_020 Hb_005648_020 Hb_170077_020--Hb_005648_020 Hb_000352_360 Hb_000352_360 Hb_170077_020--Hb_000352_360 Hb_003607_080 Hb_003607_080 Hb_170077_020--Hb_003607_080 Hb_002304_110 Hb_002304_110 Hb_000813_020--Hb_002304_110 Hb_000334_090 Hb_000334_090 Hb_000813_020--Hb_000334_090 Hb_000813_020--Hb_001257_140 Hb_001898_030 Hb_001898_030 Hb_000813_020--Hb_001898_030 Hb_005144_150 Hb_005144_150 Hb_000813_020--Hb_005144_150 Hb_003849_170--Hb_001257_140 Hb_003849_170--Hb_005648_020 Hb_003849_170--Hb_005144_150 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_003849_170--Hb_000352_360 Hb_001257_140--Hb_005144_150 Hb_001257_140--Hb_000352_360 Hb_010863_020 Hb_010863_020 Hb_001257_140--Hb_010863_020 Hb_003858_070 Hb_003858_070 Hb_001257_140--Hb_003858_070 Hb_003466_010 Hb_003466_010 Hb_005648_020--Hb_003466_010 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_000093_010 Hb_000093_010 Hb_005648_020--Hb_000093_010 Hb_000352_360--Hb_002616_020 Hb_002869_090 Hb_002869_090 Hb_000352_360--Hb_002869_090 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100 Hb_008021_050 Hb_008021_050 Hb_003607_080--Hb_008021_050 Hb_003607_080--Hb_000093_010 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_003607_080--Hb_003466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.544773 1.26553 6.34856 0.0190292 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.586779 0.826179

CAGE analysis