Hb_170193_020

Information

Type -
Description -
Location Contig170193: 3412-5260
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170193_020 0.0 - - -
2 Hb_044005_010 0.1319454588 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
3 Hb_099496_010 0.1799705588 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
4 Hb_001516_050 0.2278252813 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
5 Hb_002780_060 0.2326833434 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000559_070 0.2342524776 - - calcineurin B, putative [Ricinus communis]
7 Hb_022213_030 0.2454556965 - - PREDICTED: uncharacterized protein LOC105114631 [Populus euphratica]
8 Hb_003124_030 0.2481849353 - - At4g33625-like protein [Brassica napus]
9 Hb_098315_090 0.2513932677 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
10 Hb_007078_010 0.2535502758 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001942_020 0.260823084 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
12 Hb_004657_030 0.2637240888 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
13 Hb_000022_160 0.2645493188 - - -
14 Hb_063943_010 0.2656951327 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
15 Hb_118157_010 0.2660393621 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
16 Hb_000816_260 0.2663585118 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_000668_110 0.272772637 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
18 Hb_022958_010 0.2733703824 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
19 Hb_111868_010 0.2748178256 - - hypothetical protein CICLE_v10029531mg [Citrus clementina]
20 Hb_002849_160 0.2766486717 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_170193_020 Hb_170193_020 Hb_044005_010 Hb_044005_010 Hb_170193_020--Hb_044005_010 Hb_099496_010 Hb_099496_010 Hb_170193_020--Hb_099496_010 Hb_001516_050 Hb_001516_050 Hb_170193_020--Hb_001516_050 Hb_002780_060 Hb_002780_060 Hb_170193_020--Hb_002780_060 Hb_000559_070 Hb_000559_070 Hb_170193_020--Hb_000559_070 Hb_022213_030 Hb_022213_030 Hb_170193_020--Hb_022213_030 Hb_044005_010--Hb_099496_010 Hb_007078_010 Hb_007078_010 Hb_044005_010--Hb_007078_010 Hb_022958_010 Hb_022958_010 Hb_044005_010--Hb_022958_010 Hb_001496_080 Hb_001496_080 Hb_044005_010--Hb_001496_080 Hb_063943_010 Hb_063943_010 Hb_044005_010--Hb_063943_010 Hb_099496_010--Hb_002780_060 Hb_098315_090 Hb_098315_090 Hb_099496_010--Hb_098315_090 Hb_011639_040 Hb_011639_040 Hb_099496_010--Hb_011639_040 Hb_000022_170 Hb_000022_170 Hb_099496_010--Hb_000022_170 Hb_001516_050--Hb_022213_030 Hb_000599_230 Hb_000599_230 Hb_001516_050--Hb_000599_230 Hb_001266_120 Hb_001266_120 Hb_001516_050--Hb_001266_120 Hb_002320_090 Hb_002320_090 Hb_001516_050--Hb_002320_090 Hb_001080_150 Hb_001080_150 Hb_001516_050--Hb_001080_150 Hb_001942_020 Hb_001942_020 Hb_001516_050--Hb_001942_020 Hb_002780_060--Hb_000022_170 Hb_000505_100 Hb_000505_100 Hb_002780_060--Hb_000505_100 Hb_000800_110 Hb_000800_110 Hb_002780_060--Hb_000800_110 Hb_000175_120 Hb_000175_120 Hb_002780_060--Hb_000175_120 Hb_005892_020 Hb_005892_020 Hb_002780_060--Hb_005892_020 Hb_000035_010 Hb_000035_010 Hb_002780_060--Hb_000035_010 Hb_003266_020 Hb_003266_020 Hb_000559_070--Hb_003266_020 Hb_001369_230 Hb_001369_230 Hb_000559_070--Hb_001369_230 Hb_005883_110 Hb_005883_110 Hb_000559_070--Hb_005883_110 Hb_000455_130 Hb_000455_130 Hb_000559_070--Hb_000455_130 Hb_001123_220 Hb_001123_220 Hb_000559_070--Hb_001123_220 Hb_000559_070--Hb_098315_090 Hb_000370_040 Hb_000370_040 Hb_022213_030--Hb_000370_040 Hb_022213_030--Hb_001942_020 Hb_022213_030--Hb_001080_150 Hb_177343_010 Hb_177343_010 Hb_022213_030--Hb_177343_010 Hb_000270_710 Hb_000270_710 Hb_022213_030--Hb_000270_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53836 0.748665 0.595873 0.514441 0.105936 0.550344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.36942 2.1481 2.05287

CAGE analysis