Hb_170416_010

Information

Type -
Description -
Location Contig170416: 209-723
Sequence    

Annotation

kegg
ID tcc:TCM_000499
description Cold-regulated 413-plasma membrane 2 isoform 1
nr
ID XP_012079124.1
description PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
swissprot
ID Q9SVL6
description Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1
trembl
ID A0A067KJ23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12295 PE=4 SV=1
Gene Ontology
ID GO:0005774
description cold-regulated 413 plasma membrane protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170416_010 0.0 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
2 Hb_001761_120 0.0534643279 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
3 Hb_001226_150 0.0544745068 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
4 Hb_007765_100 0.0602739709 - - PREDICTED: helicase SKI2W [Jatropha curcas]
5 Hb_007007_120 0.0628295157 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
6 Hb_003531_080 0.0650445954 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
7 Hb_010931_070 0.0670284343 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
8 Hb_002811_270 0.0688230273 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
9 Hb_000254_100 0.0691204207 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_002326_040 0.0691986374 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
11 Hb_000339_040 0.0694269485 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
12 Hb_004052_080 0.0696126052 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000103_340 0.0699431554 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
14 Hb_012506_030 0.0720103475 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_000214_050 0.0743891268 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
16 Hb_138435_010 0.0753746279 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
17 Hb_002716_060 0.0757669425 - - carboxylesterase np, putative [Ricinus communis]
18 Hb_002055_020 0.075835019 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
19 Hb_000510_360 0.0769882537 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
20 Hb_001025_120 0.0783096867 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_170416_010 Hb_170416_010 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070 Hb_001761_120--Hb_003531_080 Hb_007290_030 Hb_007290_030 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340 Hb_005867_070 Hb_005867_070 Hb_001226_150--Hb_005867_070 Hb_005000_170 Hb_005000_170 Hb_001226_150--Hb_005000_170 Hb_001226_150--Hb_000339_040 Hb_001226_150--Hb_007007_120 Hb_007894_150 Hb_007894_150 Hb_001226_150--Hb_007894_150 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_008059_010 Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_007765_100--Hb_001226_150 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_003513_010 Hb_003513_010 Hb_007007_120--Hb_003513_010 Hb_007007_120--Hb_000339_040 Hb_001472_060 Hb_001472_060 Hb_003531_080--Hb_001472_060 Hb_003531_080--Hb_007007_120 Hb_000340_420 Hb_000340_420 Hb_003531_080--Hb_000340_420 Hb_003531_080--Hb_007290_030 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9476 15.1688 24.0912 13.6717 12.5878 12.0467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6247 10.4509 15.6122 12.4893 17.8245

CAGE analysis