Hb_170487_020

Information

Type -
Description -
Location Contig170487: 14079-15543
Sequence    

Annotation

kegg
ID pxb:103935471
description TMV resistance protein N-like
nr
ID KDP45571.1
description hypothetical protein JCGZ_17178 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067LAS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15939: 15120-15262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170487_020 0.0 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
2 Hb_005048_130 0.0904346725 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
3 Hb_001005_190 0.0944408984 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
4 Hb_008103_060 0.0944472945 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
5 Hb_003370_030 0.0963175965 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
6 Hb_009564_030 0.0967526808 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
7 Hb_002043_140 0.099346761 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
8 Hb_093084_070 0.10218902 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
9 Hb_000236_410 0.1031054411 - - Paramyosin, putative [Ricinus communis]
10 Hb_000080_150 0.1052919944 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
11 Hb_003373_040 0.1053171413 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
12 Hb_005000_260 0.1068635233 - - recA family protein [Populus trichocarpa]
13 Hb_074715_010 0.108142545 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
14 Hb_000976_210 0.1085057351 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
15 Hb_011491_010 0.109010089 - - Protein YME1, putative [Ricinus communis]
16 Hb_002961_060 0.1098294114 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
17 Hb_008511_090 0.1106702606 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
18 Hb_000070_080 0.1115284989 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
19 Hb_000366_120 0.1116001385 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
20 Hb_006922_010 0.1129688046 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]

Gene co-expression network

sample Hb_170487_020 Hb_170487_020 Hb_005048_130 Hb_005048_130 Hb_170487_020--Hb_005048_130 Hb_001005_190 Hb_001005_190 Hb_170487_020--Hb_001005_190 Hb_008103_060 Hb_008103_060 Hb_170487_020--Hb_008103_060 Hb_003370_030 Hb_003370_030 Hb_170487_020--Hb_003370_030 Hb_009564_030 Hb_009564_030 Hb_170487_020--Hb_009564_030 Hb_002043_140 Hb_002043_140 Hb_170487_020--Hb_002043_140 Hb_028285_010 Hb_028285_010 Hb_005048_130--Hb_028285_010 Hb_000062_070 Hb_000062_070 Hb_005048_130--Hb_000062_070 Hb_112798_020 Hb_112798_020 Hb_005048_130--Hb_112798_020 Hb_001408_040 Hb_001408_040 Hb_005048_130--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_005048_130--Hb_010997_080 Hb_000530_010 Hb_000530_010 Hb_005048_130--Hb_000530_010 Hb_011491_010 Hb_011491_010 Hb_001005_190--Hb_011491_010 Hb_009767_100 Hb_009767_100 Hb_001005_190--Hb_009767_100 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_007163_120 Hb_007163_120 Hb_001005_190--Hb_007163_120 Hb_005288_010 Hb_005288_010 Hb_001005_190--Hb_005288_010 Hb_008511_090 Hb_008511_090 Hb_001005_190--Hb_008511_090 Hb_000070_080 Hb_000070_080 Hb_008103_060--Hb_000070_080 Hb_140049_040 Hb_140049_040 Hb_008103_060--Hb_140049_040 Hb_007635_030 Hb_007635_030 Hb_008103_060--Hb_007635_030 Hb_004195_200 Hb_004195_200 Hb_008103_060--Hb_004195_200 Hb_002876_130 Hb_002876_130 Hb_008103_060--Hb_002876_130 Hb_008103_060--Hb_002043_140 Hb_003370_030--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_033772_030 Hb_033772_030 Hb_003370_030--Hb_033772_030 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003464_090 Hb_003464_090 Hb_003370_030--Hb_003464_090 Hb_012807_050 Hb_012807_050 Hb_009564_030--Hb_012807_050 Hb_000229_020 Hb_000229_020 Hb_009564_030--Hb_000229_020 Hb_000322_150 Hb_000322_150 Hb_009564_030--Hb_000322_150 Hb_000592_090 Hb_000592_090 Hb_009564_030--Hb_000592_090 Hb_076693_020 Hb_076693_020 Hb_009564_030--Hb_076693_020 Hb_000976_210 Hb_000976_210 Hb_002043_140--Hb_000976_210 Hb_002043_140--Hb_011491_010 Hb_002006_040 Hb_002006_040 Hb_002043_140--Hb_002006_040 Hb_002043_140--Hb_007163_120 Hb_009615_170 Hb_009615_170 Hb_002043_140--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.73188 4.87479 1.10051 3.24692 3.31193 2.3694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04246 3.05884 2.41735 2.96904 1.21674

CAGE analysis