Hb_170597_010

Information

Type -
Description -
Location Contig170597: 4111-4782
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17480g
description POPTRDRAFT_1100193; hypothetical protein
nr
ID XP_002320566.2
description hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IB16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17480g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15942: 3672-4843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170597_010 0.0 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
2 Hb_116679_010 0.0503121867 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
3 Hb_006275_080 0.0605148042 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
4 Hb_011689_090 0.0619642989 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
5 Hb_002232_340 0.0632813138 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
6 Hb_006452_080 0.0695691773 - - Nodulin, putative [Ricinus communis]
7 Hb_003607_040 0.0834674015 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_003090_250 0.0835705121 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
9 Hb_000201_060 0.0867112713 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
10 Hb_006061_020 0.0887710446 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
11 Hb_000754_010 0.0890834831 - - unnamed protein product [Vitis vinifera]
12 Hb_006618_060 0.0904242222 - - PREDICTED: 21 kDa protein [Jatropha curcas]
13 Hb_006846_050 0.0921270434 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_000710_130 0.0973999481 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_000816_170 0.0976258324 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
16 Hb_000027_010 0.0993204635 - - -
17 Hb_000083_260 0.1000319057 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001123_080 0.1005698804 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000959_170 0.1024667136 - - Cell division protein kinase 7, putative [Ricinus communis]
20 Hb_000012_340 0.1029603593 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_170597_010 Hb_170597_010 Hb_116679_010 Hb_116679_010 Hb_170597_010--Hb_116679_010 Hb_006275_080 Hb_006275_080 Hb_170597_010--Hb_006275_080 Hb_011689_090 Hb_011689_090 Hb_170597_010--Hb_011689_090 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_006452_080 Hb_006452_080 Hb_170597_010--Hb_006452_080 Hb_003607_040 Hb_003607_040 Hb_170597_010--Hb_003607_040 Hb_116679_010--Hb_011689_090 Hb_116679_010--Hb_006275_080 Hb_116679_010--Hb_003607_040 Hb_116679_010--Hb_006452_080 Hb_000027_010 Hb_000027_010 Hb_116679_010--Hb_000027_010 Hb_006275_080--Hb_011689_090 Hb_006275_080--Hb_000027_010 Hb_006275_080--Hb_006452_080 Hb_000710_130 Hb_000710_130 Hb_006275_080--Hb_000710_130 Hb_011689_090--Hb_006452_080 Hb_011689_090--Hb_003607_040 Hb_011689_090--Hb_000027_010 Hb_006618_060 Hb_006618_060 Hb_002232_340--Hb_006618_060 Hb_006846_050 Hb_006846_050 Hb_002232_340--Hb_006846_050 Hb_006603_010 Hb_006603_010 Hb_002232_340--Hb_006603_010 Hb_002232_340--Hb_006275_080 Hb_025557_090 Hb_025557_090 Hb_002232_340--Hb_025557_090 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.28004 2.66196 68.5617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.137264 1.59005

CAGE analysis