Hb_170674_010

Information

Type -
Description -
Location Contig170674: 3611-5507
Sequence    

Annotation

kegg
ID rcu:RCOM_0574890
description hypothetical protein
nr
ID KDP42823.1
description hypothetical protein JCGZ_23765 [Jatropha curcas]
swissprot
ID F4K4R6
description Protein GAMETE EXPRESSED 2 OS=Arabidopsis thaliana GN=GEX2 PE=2 SV=1
trembl
ID A0A067L6I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23765 PE=4 SV=1
Gene Ontology
ID GO:0005887
description protein gamete expressed 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170674_010 0.0 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
2 Hb_085364_010 0.1458328655 - - PREDICTED: nicalin-1-like [Populus euphratica]
3 Hb_001484_100 0.1479611768 - - PREDICTED: cyanate hydratase [Jatropha curcas]
4 Hb_002311_140 0.1633645306 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
5 Hb_003640_020 0.1690818704 - - pelota, putative [Ricinus communis]
6 Hb_003078_030 0.1761220266 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
7 Hb_000179_180 0.180113528 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
8 Hb_000834_240 0.1857746733 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
9 Hb_011932_010 0.1898614057 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
10 Hb_005203_020 0.1916416622 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_000438_090 0.1923730661 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
12 Hb_005054_310 0.1926562952 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
13 Hb_002027_380 0.1953504782 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
14 Hb_000282_030 0.1962888923 - - K(+) efflux antiporter 4 [Glycine soja]
15 Hb_000589_060 0.1966336819 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
16 Hb_056987_010 0.1970311736 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
17 Hb_002869_050 0.1971370852 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
18 Hb_000134_340 0.1982785185 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
19 Hb_000152_640 0.1986752989 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
20 Hb_073171_090 0.1987315489 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]

Gene co-expression network

sample Hb_170674_010 Hb_170674_010 Hb_085364_010 Hb_085364_010 Hb_170674_010--Hb_085364_010 Hb_001484_100 Hb_001484_100 Hb_170674_010--Hb_001484_100 Hb_002311_140 Hb_002311_140 Hb_170674_010--Hb_002311_140 Hb_003640_020 Hb_003640_020 Hb_170674_010--Hb_003640_020 Hb_003078_030 Hb_003078_030 Hb_170674_010--Hb_003078_030 Hb_000179_180 Hb_000179_180 Hb_170674_010--Hb_000179_180 Hb_085364_010--Hb_002311_140 Hb_085364_010--Hb_001484_100 Hb_030545_030 Hb_030545_030 Hb_085364_010--Hb_030545_030 Hb_085364_010--Hb_003078_030 Hb_004526_010 Hb_004526_010 Hb_085364_010--Hb_004526_010 Hb_002812_010 Hb_002812_010 Hb_085364_010--Hb_002812_010 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_001484_100--Hb_030545_030 Hb_000803_180 Hb_000803_180 Hb_002311_140--Hb_000803_180 Hb_000671_060 Hb_000671_060 Hb_002311_140--Hb_000671_060 Hb_000261_280 Hb_000261_280 Hb_002311_140--Hb_000261_280 Hb_002311_140--Hb_003078_030 Hb_000163_230 Hb_000163_230 Hb_002311_140--Hb_000163_230 Hb_056987_010 Hb_056987_010 Hb_003640_020--Hb_056987_010 Hb_002027_380 Hb_002027_380 Hb_003640_020--Hb_002027_380 Hb_073171_090 Hb_073171_090 Hb_003640_020--Hb_073171_090 Hb_003640_020--Hb_085364_010 Hb_167234_010 Hb_167234_010 Hb_003640_020--Hb_167234_010 Hb_005694_010 Hb_005694_010 Hb_003640_020--Hb_005694_010 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_003078_030--Hb_000836_370 Hb_011932_010 Hb_011932_010 Hb_000179_180--Hb_011932_010 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_009393_200 Hb_009393_200 Hb_000179_180--Hb_009393_200 Hb_000179_180--Hb_001484_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629833 2.88659 1.76156 1.79348 1.25404 1.13526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.851365 0.66925 0 0.463675 0.263501

CAGE analysis