Hb_170935_010

Information

Type -
Description -
Location Contig170935: 58-813
Sequence    

Annotation

kegg
ID sita:101775828
description proline-rich receptor-like protein kinase PERK2-like
nr
ID XP_004969960.1
description PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID K3XF52
description Uncharacterized protein OS=Setaria italica GN=Si000519m.g PE=3 SV=1
Gene Ontology
ID GO:0043231
description prolin-rich extensin-like receptor protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170935_010 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
2 Hb_004908_010 0.0947460909 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
3 Hb_031862_280 0.103805752 - - hypothetical protein VITISV_012289 [Vitis vinifera]
4 Hb_002595_020 0.1110774271 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
5 Hb_000608_070 0.1521078933 - - -
6 Hb_089610_010 0.1521840469 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
7 Hb_004246_010 0.1991993075 - - -
8 Hb_001410_100 0.2452205944 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
9 Hb_165085_010 0.2463291747 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
10 Hb_142295_010 0.2496099849 - - -
11 Hb_037960_010 0.2533560927 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_092416_010 0.2551046422 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
13 Hb_002686_370 0.2555510818 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
14 Hb_000463_110 0.2557604664 - - -
15 Hb_002260_230 0.2630976231 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
16 Hb_001998_040 0.2635668874 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002641_150 0.2645474352 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
18 Hb_001792_010 0.2652436778 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
19 Hb_004894_010 0.2840509994 - - -
20 Hb_000589_430 0.2864497897 - - hypothetical protein JCGZ_01402 [Jatropha curcas]

Gene co-expression network

sample Hb_170935_010 Hb_170935_010 Hb_004908_010 Hb_004908_010 Hb_170935_010--Hb_004908_010 Hb_031862_280 Hb_031862_280 Hb_170935_010--Hb_031862_280 Hb_002595_020 Hb_002595_020 Hb_170935_010--Hb_002595_020 Hb_000608_070 Hb_000608_070 Hb_170935_010--Hb_000608_070 Hb_089610_010 Hb_089610_010 Hb_170935_010--Hb_089610_010 Hb_004246_010 Hb_004246_010 Hb_170935_010--Hb_004246_010 Hb_004908_010--Hb_031862_280 Hb_004908_010--Hb_002595_020 Hb_004908_010--Hb_000608_070 Hb_004908_010--Hb_089610_010 Hb_004908_010--Hb_004246_010 Hb_031862_280--Hb_002595_020 Hb_031862_280--Hb_089610_010 Hb_031862_280--Hb_000608_070 Hb_031862_280--Hb_004246_010 Hb_002595_020--Hb_089610_010 Hb_002595_020--Hb_000608_070 Hb_001410_100 Hb_001410_100 Hb_002595_020--Hb_001410_100 Hb_000608_070--Hb_004246_010 Hb_165085_010 Hb_165085_010 Hb_000608_070--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000608_070--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000608_070--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_000608_070--Hb_002686_370 Hb_017987_010 Hb_017987_010 Hb_089610_010--Hb_017987_010 Hb_011316_130 Hb_011316_130 Hb_089610_010--Hb_011316_130 Hb_004246_010--Hb_165085_010 Hb_004246_010--Hb_142295_010 Hb_004246_010--Hb_092416_010 Hb_004246_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_004246_010--Hb_000463_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0524029 0 0 0.334649 5.93925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 16.3979 0

CAGE analysis