Hb_171065_010

Information

Type -
Description -
Location Contig171065: 1081-2334
Sequence    

Annotation

kegg
ID tcc:TCM_006880
description Ribonuclease H protein
nr
ID XP_007042183.1
description Ribonuclease H protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DZ04
description Ribonuclease H protein OS=Theobroma cacao GN=TCM_006880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171065_010 0.0 - - Ribonuclease H protein [Theobroma cacao]
2 Hb_001342_050 0.2527152602 - - -
3 Hb_000982_140 0.3106509814 - - histidine kinase 1 plant, putative [Ricinus communis]
4 Hb_003581_190 0.315754425 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
5 Hb_004881_100 0.3464562946 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
6 Hb_134015_010 0.3467363984 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
7 Hb_006726_010 0.3481263447 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
8 Hb_001477_140 0.3541743751 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000483_210 0.3550449402 - - hypothetical protein JCGZ_03497 [Jatropha curcas]
10 Hb_002644_030 0.3639394571 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
11 Hb_000069_770 0.3826299398 - - translation initiation factor [Rheum australe]
12 Hb_043623_020 0.3873931646 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
13 Hb_001143_260 0.3874458542 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
14 Hb_021576_020 0.394988891 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
15 Hb_161929_010 0.3954372751 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
16 Hb_000304_060 0.4005945174 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
17 Hb_000060_120 0.4008256505 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
18 Hb_001221_280 0.4024027115 - - -
19 Hb_002391_100 0.4037322537 - - hypothetical protein POPTR_0007s09360g [Populus trichocarpa]
20 Hb_074108_010 0.4067911413 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_171065_010 Hb_171065_010 Hb_001342_050 Hb_001342_050 Hb_171065_010--Hb_001342_050 Hb_000982_140 Hb_000982_140 Hb_171065_010--Hb_000982_140 Hb_003581_190 Hb_003581_190 Hb_171065_010--Hb_003581_190 Hb_004881_100 Hb_004881_100 Hb_171065_010--Hb_004881_100 Hb_134015_010 Hb_134015_010 Hb_171065_010--Hb_134015_010 Hb_006726_010 Hb_006726_010 Hb_171065_010--Hb_006726_010 Hb_001143_260 Hb_001143_260 Hb_001342_050--Hb_001143_260 Hb_001789_170 Hb_001789_170 Hb_001342_050--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_001342_050--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_001342_050--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001342_050--Hb_011356_020 Hb_000197_300 Hb_000197_300 Hb_000982_140--Hb_000197_300 Hb_000803_140 Hb_000803_140 Hb_000982_140--Hb_000803_140 Hb_000590_030 Hb_000590_030 Hb_000982_140--Hb_000590_030 Hb_000982_140--Hb_134015_010 Hb_000060_120 Hb_000060_120 Hb_000982_140--Hb_000060_120 Hb_003581_190--Hb_001342_050 Hb_001837_020 Hb_001837_020 Hb_003581_190--Hb_001837_020 Hb_008370_010 Hb_008370_010 Hb_003581_190--Hb_008370_010 Hb_006569_070 Hb_006569_070 Hb_003581_190--Hb_006569_070 Hb_003581_190--Hb_004881_100 Hb_000512_070 Hb_000512_070 Hb_004881_100--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004881_100--Hb_001242_090 Hb_004103_030 Hb_004103_030 Hb_004881_100--Hb_004103_030 Hb_177179_010 Hb_177179_010 Hb_004881_100--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_004881_100--Hb_002289_130 Hb_001506_010 Hb_001506_010 Hb_004881_100--Hb_001506_010 Hb_002311_060 Hb_002311_060 Hb_134015_010--Hb_002311_060 Hb_004228_090 Hb_004228_090 Hb_134015_010--Hb_004228_090 Hb_021576_020 Hb_021576_020 Hb_134015_010--Hb_021576_020 Hb_000080_160 Hb_000080_160 Hb_134015_010--Hb_000080_160 Hb_079751_010 Hb_079751_010 Hb_134015_010--Hb_079751_010 Hb_032717_070 Hb_032717_070 Hb_134015_010--Hb_032717_070 Hb_007904_240 Hb_007904_240 Hb_006726_010--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_006726_010--Hb_000069_770 Hb_006726_010--Hb_021576_020 Hb_000061_200 Hb_000061_200 Hb_006726_010--Hb_000061_200 Hb_000599_320 Hb_000599_320 Hb_006726_010--Hb_000599_320 Hb_000388_030 Hb_000388_030 Hb_006726_010--Hb_000388_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0484301 0.0173037 0.0587555 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.135837 0.0295103 0

CAGE analysis