Hb_171215_010

Information

Type -
Description -
Location Contig171215: 252-1875
Sequence    

Annotation

kegg
ID rcu:RCOM_1429290
description vesicle-associated membrane protein, putative
nr
ID XP_002512284.1
description vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID B9DHD7
description Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1
trembl
ID B9REW5
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1429290 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171215_010 0.0 - - vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_000107_430 0.0849351473 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
3 Hb_000244_180 0.0860146972 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001357_200 0.0904831525 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
5 Hb_022092_030 0.0933508091 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
6 Hb_001226_140 0.0936971613 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
7 Hb_000025_350 0.0954590956 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
8 Hb_000167_110 0.0959689313 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_000046_540 0.0990155618 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
10 Hb_007533_040 0.0996470826 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_012573_050 0.0999410744 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
12 Hb_032202_040 0.1023767967 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
13 Hb_001014_060 0.1029109919 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
14 Hb_000635_090 0.1055008662 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
15 Hb_000078_140 0.1058603316 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
16 Hb_001633_200 0.1066919806 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
17 Hb_003363_070 0.1079816211 - - -
18 Hb_000260_460 0.1082901353 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
19 Hb_001014_070 0.1086484793 - - PREDICTED: uncharacterized protein LOC105647305 [Jatropha curcas]
20 Hb_000805_100 0.109038581 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_171215_010 Hb_171215_010 Hb_000107_430 Hb_000107_430 Hb_171215_010--Hb_000107_430 Hb_000244_180 Hb_000244_180 Hb_171215_010--Hb_000244_180 Hb_001357_200 Hb_001357_200 Hb_171215_010--Hb_001357_200 Hb_022092_030 Hb_022092_030 Hb_171215_010--Hb_022092_030 Hb_001226_140 Hb_001226_140 Hb_171215_010--Hb_001226_140 Hb_000025_350 Hb_000025_350 Hb_171215_010--Hb_000025_350 Hb_002762_110 Hb_002762_110 Hb_000107_430--Hb_002762_110 Hb_003053_110 Hb_003053_110 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_007192_030 Hb_007192_030 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_004644_030 Hb_004644_030 Hb_000107_430--Hb_004644_030 Hb_012573_050 Hb_012573_050 Hb_000244_180--Hb_012573_050 Hb_004754_050 Hb_004754_050 Hb_000244_180--Hb_004754_050 Hb_007975_060 Hb_007975_060 Hb_000244_180--Hb_007975_060 Hb_000721_030 Hb_000721_030 Hb_000244_180--Hb_000721_030 Hb_001876_040 Hb_001876_040 Hb_000244_180--Hb_001876_040 Hb_001357_200--Hb_000025_350 Hb_001014_060 Hb_001014_060 Hb_001357_200--Hb_001014_060 Hb_003913_130 Hb_003913_130 Hb_001357_200--Hb_003913_130 Hb_001014_070 Hb_001014_070 Hb_001357_200--Hb_001014_070 Hb_000304_080 Hb_000304_080 Hb_001357_200--Hb_000304_080 Hb_007533_040 Hb_007533_040 Hb_001357_200--Hb_007533_040 Hb_022092_030--Hb_001226_140 Hb_000340_040 Hb_000340_040 Hb_022092_030--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022092_030--Hb_005511_140 Hb_000169_020 Hb_000169_020 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_003125_220 Hb_003125_220 Hb_022092_030--Hb_003125_220 Hb_032202_040 Hb_032202_040 Hb_001226_140--Hb_032202_040 Hb_008421_020 Hb_008421_020 Hb_001226_140--Hb_008421_020 Hb_000504_180 Hb_000504_180 Hb_001226_140--Hb_000504_180 Hb_001818_100 Hb_001818_100 Hb_001226_140--Hb_001818_100 Hb_158530_020 Hb_158530_020 Hb_001226_140--Hb_158530_020 Hb_000025_350--Hb_001014_060 Hb_000025_350--Hb_001014_070 Hb_000025_350--Hb_003913_130 Hb_000025_350--Hb_000304_080 Hb_002042_050 Hb_002042_050 Hb_000025_350--Hb_002042_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9907 21.3937 47.5192 43.6415 15.1099 17.6758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3413 20.0469 42.2304 24.1294 60.2669

CAGE analysis