Hb_171273_010

Information

Type -
Description -
Location Contig171273: 4145-6367
Sequence    

Annotation

kegg
ID tcc:TCM_030368
description E3 ubiquitin-protein ligase UPL5
nr
ID XP_007026270.1
description E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A061GI97
description E3 ubiquitin-protein ligase UPL5 OS=Theobroma cacao GN=TCM_030368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171273_010 0.0 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
2 Hb_006634_010 0.1877601156 - - -
3 Hb_009189_060 0.2156369704 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
4 Hb_008053_020 0.2544619343 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000796_060 0.2766506077 - - Glycogenin-2 [Aegilops tauschii]
6 Hb_048207_010 0.3002764199 - - heat-shock protein, putative [Ricinus communis]
7 Hb_000035_310 0.3065936422 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
8 Hb_125861_010 0.3106285966 - - hypothetical protein RCOM_0703970 [Ricinus communis]
9 Hb_000853_290 0.3175334459 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
10 Hb_168893_010 0.3187967928 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
11 Hb_001723_110 0.3231865656 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
12 Hb_000398_130 0.324710525 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
13 Hb_007137_060 0.3250757031 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
14 Hb_027255_010 0.3280778529 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
15 Hb_002426_010 0.3287632633 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_003529_220 0.3300938666 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
17 Hb_000206_130 0.3350736088 - - unnamed protein product [Vitis vinifera]
18 Hb_009686_010 0.3351623609 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
19 Hb_009189_030 0.3355887485 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
20 Hb_003647_120 0.3419524882 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_171273_010 Hb_171273_010 Hb_006634_010 Hb_006634_010 Hb_171273_010--Hb_006634_010 Hb_009189_060 Hb_009189_060 Hb_171273_010--Hb_009189_060 Hb_008053_020 Hb_008053_020 Hb_171273_010--Hb_008053_020 Hb_000796_060 Hb_000796_060 Hb_171273_010--Hb_000796_060 Hb_048207_010 Hb_048207_010 Hb_171273_010--Hb_048207_010 Hb_000035_310 Hb_000035_310 Hb_171273_010--Hb_000035_310 Hb_006634_010--Hb_009189_060 Hb_006634_010--Hb_048207_010 Hb_002426_010 Hb_002426_010 Hb_006634_010--Hb_002426_010 Hb_001031_060 Hb_001031_060 Hb_006634_010--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_006634_010--Hb_000510_220 Hb_009189_060--Hb_002426_010 Hb_009189_060--Hb_000510_220 Hb_009189_060--Hb_001031_060 Hb_009189_060--Hb_048207_010 Hb_011794_020 Hb_011794_020 Hb_008053_020--Hb_011794_020 Hb_009189_030 Hb_009189_030 Hb_008053_020--Hb_009189_030 Hb_009686_010 Hb_009686_010 Hb_008053_020--Hb_009686_010 Hb_027255_010 Hb_027255_010 Hb_008053_020--Hb_027255_010 Hb_125861_010 Hb_125861_010 Hb_008053_020--Hb_125861_010 Hb_000853_290 Hb_000853_290 Hb_008053_020--Hb_000853_290 Hb_000796_060--Hb_048207_010 Hb_168893_010 Hb_168893_010 Hb_000796_060--Hb_168893_010 Hb_005730_100 Hb_005730_100 Hb_000796_060--Hb_005730_100 Hb_001104_040 Hb_001104_040 Hb_000796_060--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_000796_060--Hb_001279_230 Hb_000398_130 Hb_000398_130 Hb_000796_060--Hb_000398_130 Hb_048207_010--Hb_001104_040 Hb_048207_010--Hb_001279_230 Hb_048207_010--Hb_005730_100 Hb_120662_010 Hb_120662_010 Hb_000035_310--Hb_120662_010 Hb_004994_340 Hb_004994_340 Hb_000035_310--Hb_004994_340 Hb_002411_130 Hb_002411_130 Hb_000035_310--Hb_002411_130 Hb_000001_160 Hb_000001_160 Hb_000035_310--Hb_000001_160 Hb_009119_030 Hb_009119_030 Hb_000035_310--Hb_009119_030 Hb_003492_010 Hb_003492_010 Hb_000035_310--Hb_003492_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0621985 0.0561062 0.0115559 0.260618 0.189919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.025879 0 0 0

CAGE analysis