Hb_171420_010

Information

Type -
Description -
Location Contig171420: 10200-10612
Sequence    

Annotation

kegg
ID atr:s00126p00056890
description AMTR_s00126p00056890; hypothetical protein
nr
ID ERM97116.1
description hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID W1NN91
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00126p00056890 PE=4 SV=1
Gene Ontology
ID GO:0016740
description patatin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171420_010 0.0 - - hypothetical protein AMTR_s00126p00056890 [Amborella trichopoda]
2 Hb_000042_410 0.0009074062 - - Patatin precursor, putative [Ricinus communis]
3 Hb_014549_030 0.0014273241 - - receptor-kinase, putative [Ricinus communis]
4 Hb_004994_270 0.0022586251 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
5 Hb_002081_110 0.0025379791 - - PREDICTED: uncharacterized protein LOC105129793 isoform X1 [Populus euphratica]
6 Hb_001031_130 0.0026291999 - - zinc finger protein, putative [Ricinus communis]
7 Hb_000185_190 0.0066101583 - - hypothetical protein L484_017526 [Morus notabilis]
8 Hb_015754_010 0.0081420458 - - Galactose oxidase precursor, putative [Ricinus communis]
9 Hb_001579_080 0.0101651344 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_002986_150 0.0116189452 - - hypothetical protein glysoja_022060 [Glycine soja]
11 Hb_001728_090 0.0140064356 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
12 Hb_000771_010 0.0140979128 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_166937_010 0.0182456136 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
14 Hb_013607_020 0.0198467193 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_003549_110 0.0219448173 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
16 Hb_004712_120 0.0221369157 - - Pectinesterase U1 precursor, putative [Ricinus communis]
17 Hb_064476_010 0.0238447487 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
18 Hb_001504_200 0.0244667953 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
19 Hb_000243_270 0.0278662911 - - Pectinesterase-2 precursor, putative [Ricinus communis]
20 Hb_001300_110 0.0288968518 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]

Gene co-expression network

sample Hb_171420_010 Hb_171420_010 Hb_000042_410 Hb_000042_410 Hb_171420_010--Hb_000042_410 Hb_014549_030 Hb_014549_030 Hb_171420_010--Hb_014549_030 Hb_004994_270 Hb_004994_270 Hb_171420_010--Hb_004994_270 Hb_002081_110 Hb_002081_110 Hb_171420_010--Hb_002081_110 Hb_001031_130 Hb_001031_130 Hb_171420_010--Hb_001031_130 Hb_000185_190 Hb_000185_190 Hb_171420_010--Hb_000185_190 Hb_000042_410--Hb_014549_030 Hb_000042_410--Hb_004994_270 Hb_000042_410--Hb_002081_110 Hb_000042_410--Hb_001031_130 Hb_000042_410--Hb_000185_190 Hb_014549_030--Hb_004994_270 Hb_014549_030--Hb_002081_110 Hb_014549_030--Hb_001031_130 Hb_014549_030--Hb_000185_190 Hb_004994_270--Hb_002081_110 Hb_004994_270--Hb_001031_130 Hb_004994_270--Hb_000185_190 Hb_002081_110--Hb_001031_130 Hb_002081_110--Hb_000185_190 Hb_001031_130--Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_000185_190--Hb_015754_010 Hb_001579_080 Hb_001579_080 Hb_000185_190--Hb_001579_080 Hb_000771_010 Hb_000771_010 Hb_000185_190--Hb_000771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 12.8271 6.80961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis