Hb_171554_020

Information

Type transcription factor
Description TF Family: HB
Location Contig171554: 35849-37523
Sequence    

Annotation

kegg
ID rcu:RCOM_0843780
description Protein WUSCHEL, putative
nr
ID XP_002526032.1
description Protein WUSCHEL, putative [Ricinus communis]
swissprot
ID Q6X7K0
description WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2
trembl
ID B9SJ63
description Protein WUSCHEL, putative OS=Ricinus communis GN=RCOM_0843780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description wuschel related homeobox isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171554_020 0.0 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
2 Hb_001892_160 0.1400230323 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
3 Hb_010290_020 0.1589715879 - - RAB6-interacting protein, putative [Ricinus communis]
4 Hb_000580_060 0.1661136165 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
5 Hb_000007_310 0.1753919688 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
6 Hb_001604_110 0.1801798265 - - -
7 Hb_177627_010 0.18126528 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_003360_020 0.1827436568 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
9 Hb_000329_540 0.1836698471 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
10 Hb_001741_100 0.1850592235 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
11 Hb_004307_040 0.1896534993 - - -
12 Hb_000252_090 0.1981670868 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
13 Hb_075570_010 0.2018384442 - - -
14 Hb_000441_230 0.2029221239 - - unnamed protein product [Coffea canephora]
15 Hb_005539_320 0.2040152943 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
16 Hb_132629_010 0.2043773293 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_182310_010 0.2068149254 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_000454_030 0.2092066359 - - -
19 Hb_000153_020 0.210868017 - - conserved hypothetical protein [Ricinus communis]
20 Hb_156144_020 0.2138113747 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]

Gene co-expression network

sample Hb_171554_020 Hb_171554_020 Hb_001892_160 Hb_001892_160 Hb_171554_020--Hb_001892_160 Hb_010290_020 Hb_010290_020 Hb_171554_020--Hb_010290_020 Hb_000580_060 Hb_000580_060 Hb_171554_020--Hb_000580_060 Hb_000007_310 Hb_000007_310 Hb_171554_020--Hb_000007_310 Hb_001604_110 Hb_001604_110 Hb_171554_020--Hb_001604_110 Hb_177627_010 Hb_177627_010 Hb_171554_020--Hb_177627_010 Hb_156144_020 Hb_156144_020 Hb_001892_160--Hb_156144_020 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_001892_160--Hb_177627_010 Hb_010290_020--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_010290_020--Hb_004307_040 Hb_003540_140 Hb_003540_140 Hb_010290_020--Hb_003540_140 Hb_005568_070 Hb_005568_070 Hb_010290_020--Hb_005568_070 Hb_003360_020 Hb_003360_020 Hb_010290_020--Hb_003360_020 Hb_000329_540 Hb_000329_540 Hb_010290_020--Hb_000329_540 Hb_000441_230 Hb_000441_230 Hb_000580_060--Hb_000441_230 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_000007_310--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_177627_010 Hb_003494_260 Hb_003494_260 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_000007_310--Hb_000153_040 Hb_005539_320 Hb_005539_320 Hb_001604_110--Hb_005539_320 Hb_001604_110--Hb_177627_010 Hb_001604_110--Hb_000153_020 Hb_001604_110--Hb_132629_010 Hb_001604_110--Hb_000007_310 Hb_001604_110--Hb_075570_010 Hb_177627_010--Hb_132629_010 Hb_177627_010--Hb_075570_010 Hb_177627_010--Hb_005539_320 Hb_177627_010--Hb_000153_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.83075 0.0322127 0.166592 0.172085 2.55948 4.75028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221395 0.0348287 0.0645381 0 0

CAGE analysis