Hb_171554_080

Information

Type -
Description -
Location Contig171554: 70800-85088
Sequence    

Annotation

kegg
ID rcu:RCOM_0843760
description hypothetical protein
nr
ID XP_012072229.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KSU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04706 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16041: 71115-84929 , PASA_asmbl_16042: 77433-78164 , PASA_asmbl_16043: 84128-84457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171554_080 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_012573_030 0.071682421 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001863_480 0.0928657911 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
4 Hb_054865_130 0.096744012 - - acyltransferase, putative [Ricinus communis]
5 Hb_009265_060 0.0994961447 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_012522_030 0.0996465808 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000419_040 0.1063875715 - - chorismate synthase [Hevea brasiliensis]
8 Hb_001141_470 0.110180693 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
9 Hb_001711_030 0.1110795756 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
10 Hb_001762_060 0.1155854558 - - pantothenate kinase, putative [Ricinus communis]
11 Hb_002352_010 0.1178334506 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
12 Hb_002539_080 0.1183094301 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
13 Hb_002527_070 0.1223815368 - - axonemal dynein light chain, putative [Ricinus communis]
14 Hb_001006_180 0.1259422446 - - PREDICTED: endonuclease V-like [Jatropha curcas]
15 Hb_007047_010 0.1274532505 - - PREDICTED: expansin-A13 [Jatropha curcas]
16 Hb_004738_010 0.1278337057 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
17 Hb_005463_020 0.1288523992 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
18 Hb_012423_050 0.1299169 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_007924_020 0.1299847998 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_024952_010 0.1301542075 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_171554_080 Hb_171554_080 Hb_012573_030 Hb_012573_030 Hb_171554_080--Hb_012573_030 Hb_001863_480 Hb_001863_480 Hb_171554_080--Hb_001863_480 Hb_054865_130 Hb_054865_130 Hb_171554_080--Hb_054865_130 Hb_009265_060 Hb_009265_060 Hb_171554_080--Hb_009265_060 Hb_012522_030 Hb_012522_030 Hb_171554_080--Hb_012522_030 Hb_000419_040 Hb_000419_040 Hb_171554_080--Hb_000419_040 Hb_012573_030--Hb_009265_060 Hb_012573_030--Hb_054865_130 Hb_001006_180 Hb_001006_180 Hb_012573_030--Hb_001006_180 Hb_004048_050 Hb_004048_050 Hb_012573_030--Hb_004048_050 Hb_024714_060 Hb_024714_060 Hb_012573_030--Hb_024714_060 Hb_001711_030 Hb_001711_030 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001439_170 Hb_001439_170 Hb_001863_480--Hb_001439_170 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_054865_130--Hb_009265_060 Hb_005463_020 Hb_005463_020 Hb_054865_130--Hb_005463_020 Hb_054865_130--Hb_004048_050 Hb_003020_310 Hb_003020_310 Hb_054865_130--Hb_003020_310 Hb_009265_060--Hb_024714_060 Hb_009265_060--Hb_004048_050 Hb_009265_060--Hb_000419_040 Hb_009265_060--Hb_001006_180 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_012522_030--Hb_001711_030 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_002936_050 Hb_002936_050 Hb_000419_040--Hb_002936_050 Hb_000419_040--Hb_001863_480 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9557 2.74613 2.97965 5.20746 8.11828 18.7938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2882 22.9739 50.4723 5.611 5.46273

CAGE analysis