Hb_171554_090

Information

Type -
Description -
Location Contig171554: 88332-89398
Sequence    

Annotation

kegg
ID rcu:RCOM_0843750
description groes chaperonin, putative
nr
ID XP_012072228.1
description PREDICTED: 10 kDa chaperonin [Jatropha curcas]
swissprot
ID P34893
description 10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1
trembl
ID A0A067KPJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04705 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 10 kda chaperonin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16044: 88355-89354
cDNA
(Sanger)
(ID:Location)		 024_F01.ab1: 88355-89354

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171554_090 0.0 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
2 Hb_004502_030 0.1143296413 - - unknown [Populus trichocarpa]
3 Hb_044662_040 0.1162696568 - - -
4 Hb_025236_040 0.1180509095 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001951_260 0.1194396006 - - 60S ribosomal protein L32, putative [Ricinus communis]
6 Hb_000058_040 0.121652637 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
7 Hb_003633_130 0.1225537002 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
8 Hb_004032_060 0.1237417567 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
9 Hb_001663_110 0.1253863544 - - RNA binding protein, putative [Ricinus communis]
10 Hb_004607_120 0.1270668655 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
11 Hb_000175_390 0.1285157313 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
12 Hb_004109_060 0.1291463777 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
13 Hb_008578_010 0.1296845956 - - 30S ribosomal protein S19, putative [Ricinus communis]
14 Hb_003544_090 0.1298157179 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
15 Hb_000084_290 0.130278427 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
16 Hb_004447_030 0.1310106851 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
17 Hb_001623_370 0.1313286355 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006261_040 0.1316729309 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
19 Hb_017259_010 0.1323498452 - - -
20 Hb_007632_250 0.1334024168 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_171554_090 Hb_171554_090 Hb_004502_030 Hb_004502_030 Hb_171554_090--Hb_004502_030 Hb_044662_040 Hb_044662_040 Hb_171554_090--Hb_044662_040 Hb_025236_040 Hb_025236_040 Hb_171554_090--Hb_025236_040 Hb_001951_260 Hb_001951_260 Hb_171554_090--Hb_001951_260 Hb_000058_040 Hb_000058_040 Hb_171554_090--Hb_000058_040 Hb_003633_130 Hb_003633_130 Hb_171554_090--Hb_003633_130 Hb_000847_070 Hb_000847_070 Hb_004502_030--Hb_000847_070 Hb_007992_030 Hb_007992_030 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_004502_030--Hb_003633_130 Hb_002851_060 Hb_002851_060 Hb_044662_040--Hb_002851_060 Hb_004607_120 Hb_004607_120 Hb_044662_040--Hb_004607_120 Hb_044662_040--Hb_004502_030 Hb_005271_070 Hb_005271_070 Hb_044662_040--Hb_005271_070 Hb_007632_250 Hb_007632_250 Hb_044662_040--Hb_007632_250 Hb_000977_140 Hb_000977_140 Hb_044662_040--Hb_000977_140 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000084_290 Hb_000084_290 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_001951_260--Hb_000290_020 Hb_004032_060 Hb_004032_060 Hb_001951_260--Hb_004032_060 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_000529_080 Hb_000529_080 Hb_000058_040--Hb_000529_080 Hb_004450_060 Hb_004450_060 Hb_000058_040--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_000058_040--Hb_000088_200 Hb_003467_010 Hb_003467_010 Hb_000058_040--Hb_003467_010 Hb_001663_110 Hb_001663_110 Hb_000058_040--Hb_001663_110 Hb_005237_060 Hb_005237_060 Hb_000058_040--Hb_005237_060 Hb_119583_010 Hb_119583_010 Hb_003633_130--Hb_119583_010 Hb_002942_070 Hb_002942_070 Hb_003633_130--Hb_002942_070 Hb_003633_130--Hb_007992_030 Hb_003633_130--Hb_007632_250 Hb_003633_130--Hb_000847_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
334.514 111.913 130.37 44.7026 357.745 483.325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
238.268 333.378 46.1427 39.0035 40.6375

CAGE analysis