Hb_171646_010

Information

Type -
Description -
Location Contig171646: 1931-2674
Sequence    

Annotation

kegg
ID egr:104455179
description L-type lectin-domain containing receptor kinase IX.1-like
nr
ID KJB77573.1
description hypothetical protein B456_012G144300, partial [Gossypium raimondii]
swissprot
ID Q93X49
description Lectin OS=Lens culinaris subsp. orientalis PE=3 SV=2
trembl
ID A0A0D2TPV4
description Gossypium raimondii chromosome 12, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_012G144300 PE=4 SV=1
Gene Ontology
ID GO:0016772
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171646_010 0.0 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
2 Hb_000077_430 0.0591290799 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
3 Hb_021622_010 0.0717473775 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
4 Hb_014109_030 0.0792329409 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
5 Hb_000844_120 0.0794782672 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
6 Hb_003994_210 0.0795429876 - - zinc finger protein, putative [Ricinus communis]
7 Hb_004447_040 0.0797268195 - - cyclin d, putative [Ricinus communis]
8 Hb_000500_380 0.0817778799 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
9 Hb_004744_030 0.0819523779 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_012573_060 0.0822334972 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
11 Hb_046150_010 0.082756748 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
12 Hb_002186_150 0.082766675 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
13 Hb_011846_020 0.0833197845 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
14 Hb_000680_080 0.0834011744 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
15 Hb_022929_010 0.0835592265 - - zinc/iron transporter, putative [Ricinus communis]
16 Hb_002030_140 0.0840393101 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
17 Hb_002837_010 0.0852556844 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
18 Hb_005854_060 0.0859600484 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_001546_100 0.0862826852 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
20 Hb_013849_010 0.0867869657 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_171646_010 Hb_171646_010 Hb_000077_430 Hb_000077_430 Hb_171646_010--Hb_000077_430 Hb_021622_010 Hb_021622_010 Hb_171646_010--Hb_021622_010 Hb_014109_030 Hb_014109_030 Hb_171646_010--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_171646_010--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_171646_010--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_171646_010--Hb_004447_040 Hb_002030_140 Hb_002030_140 Hb_000077_430--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_000077_430--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000077_430--Hb_000680_080 Hb_001546_100 Hb_001546_100 Hb_000077_430--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000077_430--Hb_012573_060 Hb_000077_430--Hb_014109_030 Hb_021622_010--Hb_000844_120 Hb_021622_010--Hb_003994_210 Hb_021622_010--Hb_004447_040 Hb_021622_010--Hb_014109_030 Hb_000500_380 Hb_000500_380 Hb_021622_010--Hb_000500_380 Hb_004744_030 Hb_004744_030 Hb_021622_010--Hb_004744_030 Hb_014109_030--Hb_000844_120 Hb_014109_030--Hb_003994_210 Hb_014109_030--Hb_004447_040 Hb_014109_030--Hb_000500_380 Hb_014109_030--Hb_004744_030 Hb_046150_010 Hb_046150_010 Hb_014109_030--Hb_046150_010 Hb_000844_120--Hb_003994_210 Hb_000844_120--Hb_004447_040 Hb_000844_120--Hb_000500_380 Hb_000844_120--Hb_004744_030 Hb_000844_120--Hb_046150_010 Hb_003994_210--Hb_004447_040 Hb_003994_210--Hb_000500_380 Hb_003994_210--Hb_004744_030 Hb_003994_210--Hb_046150_010 Hb_004447_040--Hb_000500_380 Hb_004447_040--Hb_004744_030 Hb_004447_040--Hb_046150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0271208 10.3377 0.899999 0 0.114334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis