Hb_171685_030

Information

Type -
Description -
Location Contig171685: 14132-17072
Sequence    

Annotation

kegg
ID rcu:RCOM_2130520
description NADH dehydrogenase, putative
nr
ID CAA27743.1
description URF-1 [Citrullus lanatus]
swissprot
ID P08834
description NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1
trembl
ID B9TAM5
description NADH dehydrogenase, putative (Fragment) OS=Ricinus communis GN=RCOM_2130520 PE=3 SV=1
Gene Ontology
ID GO:0005743
description nadh dehydrogenase subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171685_030 0.0 - - URF-1 [Citrullus lanatus]
2 Hb_000159_020 0.1470140656 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
3 Hb_102602_030 0.1507333882 - - hypothetical protein (mitochondrion) [Vicia faba]
4 Hb_062192_060 0.1713753646 - - maturase (mitochondrion) [Hevea brasiliensis]
5 Hb_034455_010 0.1802766228 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_171685_040 0.1848979839 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
7 Hb_005742_010 0.1914885036 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_154997_010 0.1936819995 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
9 Hb_006933_010 0.1953694763 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002495_050 0.1972671021 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
11 Hb_001124_170 0.1978759189 - - putative retrotransposon protein [Phyllostachys edulis]
12 Hb_159938_010 0.2106009517 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_004124_010 0.2122216629 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_002482_050 0.218647956 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
15 Hb_104735_010 0.2216463538 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
16 Hb_088080_030 0.2226027019 - - ribosomal protein S4 [Hevea brasiliensis]
17 Hb_000268_100 0.2267907551 - - -
18 Hb_062192_030 0.2270548379 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
19 Hb_072212_020 0.2299024795 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
20 Hb_002473_140 0.2314228818 - - -

Gene co-expression network

sample Hb_171685_030 Hb_171685_030 Hb_000159_020 Hb_000159_020 Hb_171685_030--Hb_000159_020 Hb_102602_030 Hb_102602_030 Hb_171685_030--Hb_102602_030 Hb_062192_060 Hb_062192_060 Hb_171685_030--Hb_062192_060 Hb_034455_010 Hb_034455_010 Hb_171685_030--Hb_034455_010 Hb_171685_040 Hb_171685_040 Hb_171685_030--Hb_171685_040 Hb_005742_010 Hb_005742_010 Hb_171685_030--Hb_005742_010 Hb_000159_020--Hb_034455_010 Hb_072212_020 Hb_072212_020 Hb_000159_020--Hb_072212_020 Hb_000159_020--Hb_102602_030 Hb_000159_020--Hb_171685_040 Hb_189099_020 Hb_189099_020 Hb_000159_020--Hb_189099_020 Hb_102602_030--Hb_171685_040 Hb_102602_010 Hb_102602_010 Hb_102602_030--Hb_102602_010 Hb_027357_010 Hb_027357_010 Hb_102602_030--Hb_027357_010 Hb_062192_030 Hb_062192_030 Hb_102602_030--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_102602_030--Hb_041813_030 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_041813_050 Hb_041813_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_034455_010--Hb_189099_020 Hb_034455_010--Hb_062192_030 Hb_003125_100 Hb_003125_100 Hb_034455_010--Hb_003125_100 Hb_001083_040 Hb_001083_040 Hb_034455_010--Hb_001083_040 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_171685_040--Hb_027357_010 Hb_013420_010 Hb_013420_010 Hb_171685_040--Hb_013420_010 Hb_171685_040--Hb_072212_020 Hb_171685_040--Hb_005742_010 Hb_005742_010--Hb_006040_050 Hb_005742_010--Hb_002482_050 Hb_005742_010--Hb_062192_060 Hb_000245_120 Hb_000245_120 Hb_005742_010--Hb_000245_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0400272 0.0799936 0.110129 0.157246 0.0178614 0.0782849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0813843 0 1.30983 0.397515 5.82869

CAGE analysis