Hb_171685_070

Information

Type -
Description -
Location Contig171685: 51992-53155
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16072: 51696-52354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171685_070 0.0 - - -
2 Hb_000336_130 0.0930951066 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
3 Hb_161881_010 0.1070977844 - - laccase, putative [Ricinus communis]
4 Hb_002010_010 0.1086279801 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_002551_030 0.1177760544 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
6 Hb_027638_010 0.1248783075 - - Protein KES1, putative [Ricinus communis]
7 Hb_003732_030 0.126244998 - - gibberellin 20-oxidase, putative [Ricinus communis]
8 Hb_000776_120 0.1262685422 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
9 Hb_004030_010 0.126292691 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
10 Hb_005194_050 0.131073974 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
11 Hb_159308_010 0.1314872565 - - ribosomal protein S4 [Cercidiphyllum japonicum]
12 Hb_001338_170 0.132342167 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
13 Hb_001610_100 0.1339434129 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_077242_020 0.13403569 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
15 Hb_000123_070 0.1372237238 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_012528_040 0.1374732535 - - -
17 Hb_063885_010 0.1388919857 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_008864_050 0.1433864755 - - protein binding protein, putative [Ricinus communis]
19 Hb_001146_030 0.1435700877 - - cytochrome P450, putative [Ricinus communis]
20 Hb_141708_010 0.1437106838 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]

Gene co-expression network

sample Hb_171685_070 Hb_171685_070 Hb_000336_130 Hb_000336_130 Hb_171685_070--Hb_000336_130 Hb_161881_010 Hb_161881_010 Hb_171685_070--Hb_161881_010 Hb_002010_010 Hb_002010_010 Hb_171685_070--Hb_002010_010 Hb_002551_030 Hb_002551_030 Hb_171685_070--Hb_002551_030 Hb_027638_010 Hb_027638_010 Hb_171685_070--Hb_027638_010 Hb_003732_030 Hb_003732_030 Hb_171685_070--Hb_003732_030 Hb_001999_330 Hb_001999_330 Hb_000336_130--Hb_001999_330 Hb_000336_130--Hb_002010_010 Hb_026188_010 Hb_026188_010 Hb_000336_130--Hb_026188_010 Hb_063885_010 Hb_063885_010 Hb_000336_130--Hb_063885_010 Hb_007101_090 Hb_007101_090 Hb_000336_130--Hb_007101_090 Hb_161881_010--Hb_002010_010 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_002010_010--Hb_003732_030 Hb_002010_010--Hb_007101_090 Hb_002010_010--Hb_001999_330 Hb_002010_010--Hb_004030_010 Hb_062192_020 Hb_062192_020 Hb_002551_030--Hb_062192_020 Hb_002551_030--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_002551_030--Hb_001508_010 Hb_034168_010 Hb_034168_010 Hb_002551_030--Hb_034168_010 Hb_077242_020 Hb_077242_020 Hb_002551_030--Hb_077242_020 Hb_088080_040 Hb_088080_040 Hb_027638_010--Hb_088080_040 Hb_001338_170 Hb_001338_170 Hb_027638_010--Hb_001338_170 Hb_027638_010--Hb_161881_010 Hb_027638_010--Hb_001508_010 Hb_003732_030--Hb_004030_010 Hb_011689_070 Hb_011689_070 Hb_003732_030--Hb_011689_070 Hb_000776_120 Hb_000776_120 Hb_003732_030--Hb_000776_120 Hb_001775_010 Hb_001775_010 Hb_003732_030--Hb_001775_010 Hb_003732_030--Hb_000922_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.223305 0.277376 0.228977 0 0.10908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0338523 4.92402

CAGE analysis