Hb_171788_010

Information

Type -
Description -
Location Contig171788: 540-1179
Sequence    

Annotation

kegg
ID cic:CICLE_v10025247mg
description hypothetical protein
nr
ID KDO56894.1
description hypothetical protein CISIN_1g007892mg [Citrus sinensis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID A0A067ENY4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007892mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16089: 580-1178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171788_010 0.0 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
2 Hb_139859_010 0.1140819716 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
3 Hb_083043_010 0.1228771527 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
4 Hb_006455_110 0.129336676 - - bromodomain-containing protein, putative [Ricinus communis]
5 Hb_003711_040 0.1314130549 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
6 Hb_030328_010 0.1315466165 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
7 Hb_000486_060 0.1347037102 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
8 Hb_000441_160 0.137270183 - - ARF GTPase activator, putative [Ricinus communis]
9 Hb_002815_060 0.137879565 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
10 Hb_011206_010 0.1396689413 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
11 Hb_010565_010 0.1406915415 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
12 Hb_001767_120 0.1450211924 - - -
13 Hb_150204_010 0.1476859271 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_033312_140 0.1482216992 - - RNA and export factor-binding family protein [Populus trichocarpa]
15 Hb_000295_100 0.1489006887 - - -
16 Hb_006455_090 0.1508986825 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
17 Hb_003376_070 0.1512704598 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
18 Hb_081879_030 0.1542985372 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
19 Hb_002092_090 0.154920283 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
20 Hb_006455_080 0.1549359022 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_171788_010 Hb_171788_010 Hb_139859_010 Hb_139859_010 Hb_171788_010--Hb_139859_010 Hb_083043_010 Hb_083043_010 Hb_171788_010--Hb_083043_010 Hb_006455_110 Hb_006455_110 Hb_171788_010--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_171788_010--Hb_003711_040 Hb_030328_010 Hb_030328_010 Hb_171788_010--Hb_030328_010 Hb_000486_060 Hb_000486_060 Hb_171788_010--Hb_000486_060 Hb_003299_090 Hb_003299_090 Hb_139859_010--Hb_003299_090 Hb_005914_090 Hb_005914_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_000270_020 Hb_000270_020 Hb_139859_010--Hb_000270_020 Hb_006455_080 Hb_006455_080 Hb_139859_010--Hb_006455_080 Hb_083043_010--Hb_003711_040 Hb_003581_020 Hb_003581_020 Hb_083043_010--Hb_003581_020 Hb_002811_120 Hb_002811_120 Hb_083043_010--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_083043_010--Hb_004881_050 Hb_006114_020 Hb_006114_020 Hb_083043_010--Hb_006114_020 Hb_150204_010 Hb_150204_010 Hb_083043_010--Hb_150204_010 Hb_005965_010 Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_090 Hb_006455_090 Hb_006455_110--Hb_006455_090 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_012807_080 Hb_012807_080 Hb_006455_110--Hb_012807_080 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_003711_040--Hb_006455_090 Hb_003711_040--Hb_002811_120 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270 Hb_006723_020 Hb_006723_020 Hb_030328_010--Hb_006723_020 Hb_001386_140 Hb_001386_140 Hb_030328_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_030328_010--Hb_010565_010 Hb_058381_010 Hb_058381_010 Hb_030328_010--Hb_058381_010 Hb_054586_020 Hb_054586_020 Hb_030328_010--Hb_054586_020 Hb_002903_080 Hb_002903_080 Hb_000486_060--Hb_002903_080 Hb_000198_070 Hb_000198_070 Hb_000486_060--Hb_000198_070 Hb_002815_060 Hb_002815_060 Hb_000486_060--Hb_002815_060 Hb_005714_130 Hb_005714_130 Hb_000486_060--Hb_005714_130 Hb_000486_060--Hb_083043_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.4744 40.9396 17.7212 47.0824 61.9535 214.894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6389 29.0123 30.193 37.4512 9.13476

CAGE analysis