Hb_171810_020

Information

Type -
Description -
Location Contig171810: 17819-18055
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G050000g
description hypothetical protein
nr
ID AAM14671.1
description peptide/glutathione transporter OPT1 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID Q84V29
description Peptide/glutathione transporter OPT1 (Fragment) OS=Vitis vinifera PE=2 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16093: 18383-19019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171810_020 0.0 - - peptide/glutathione transporter OPT1 [Vitis vinifera]
2 Hb_005253_050 0.0160127677 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_036377_010 0.0483220257 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
4 Hb_097104_010 0.0930421553 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
5 Hb_000032_130 0.1007387829 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 12 [Jatropha curcas]
6 Hb_004090_010 0.1097584628 - - Major latex protein, putative [Ricinus communis]
7 Hb_017358_060 0.1254680201 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
8 Hb_006277_090 0.1334206966 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
9 Hb_000556_050 0.1400206875 - - -
10 Hb_000103_170 0.1406511193 - - uncharacterized protein LOC100501254 [Zea mays]
11 Hb_099509_010 0.1585080513 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
12 Hb_000329_220 0.1644440619 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
13 Hb_005198_010 0.1659316082 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
14 Hb_007741_010 0.1719444253 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
15 Hb_000152_200 0.177099588 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
16 Hb_000005_160 0.1785490541 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_003729_050 0.180568763 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_177533_010 0.1840148211 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
19 Hb_155874_020 0.1843880451 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
20 Hb_063584_010 0.184698472 - - hypothetical protein JCGZ_10530 [Jatropha curcas]

Gene co-expression network

sample Hb_171810_020 Hb_171810_020 Hb_005253_050 Hb_005253_050 Hb_171810_020--Hb_005253_050 Hb_036377_010 Hb_036377_010 Hb_171810_020--Hb_036377_010 Hb_097104_010 Hb_097104_010 Hb_171810_020--Hb_097104_010 Hb_000032_130 Hb_000032_130 Hb_171810_020--Hb_000032_130 Hb_004090_010 Hb_004090_010 Hb_171810_020--Hb_004090_010 Hb_017358_060 Hb_017358_060 Hb_171810_020--Hb_017358_060 Hb_005253_050--Hb_036377_010 Hb_005253_050--Hb_097104_010 Hb_005253_050--Hb_000032_130 Hb_005253_050--Hb_017358_060 Hb_006277_090 Hb_006277_090 Hb_005253_050--Hb_006277_090 Hb_036377_010--Hb_004090_010 Hb_000329_220 Hb_000329_220 Hb_036377_010--Hb_000329_220 Hb_036377_010--Hb_097104_010 Hb_000556_050 Hb_000556_050 Hb_036377_010--Hb_000556_050 Hb_097104_010--Hb_000032_130 Hb_097104_010--Hb_006277_090 Hb_000103_170 Hb_000103_170 Hb_097104_010--Hb_000103_170 Hb_099509_010 Hb_099509_010 Hb_097104_010--Hb_099509_010 Hb_000032_130--Hb_006277_090 Hb_000032_130--Hb_000103_170 Hb_000032_130--Hb_099509_010 Hb_004090_010--Hb_000329_220 Hb_007741_010 Hb_007741_010 Hb_004090_010--Hb_007741_010 Hb_000190_200 Hb_000190_200 Hb_004090_010--Hb_000190_200 Hb_004090_010--Hb_000556_050 Hb_000152_200 Hb_000152_200 Hb_004090_010--Hb_000152_200 Hb_155874_020 Hb_155874_020 Hb_017358_060--Hb_155874_020 Hb_003729_050 Hb_003729_050 Hb_017358_060--Hb_003729_050 Hb_132840_060 Hb_132840_060 Hb_017358_060--Hb_132840_060 Hb_000853_340 Hb_000853_340 Hb_017358_060--Hb_000853_340 Hb_017358_060--Hb_000556_050 Hb_008032_010 Hb_008032_010 Hb_017358_060--Hb_008032_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.97113 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.774763

CAGE analysis