Hb_171900_050

Information

Type -
Description -
Location Contig171900: 20002-21032
Sequence    

Annotation

kegg
ID rcu:RCOM_1609090
description hypothetical protein
nr
ID XP_002511615.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16100: 20029-21009 , PASA_asmbl_16105: 21540-35910
cDNA
(Sanger)
(ID:Location)		 020_H02.ab1: 21540-35910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010810_020 0.0559135954 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
3 Hb_000545_150 0.0735387996 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_001584_070 0.0770278225 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000365_380 0.0831880541 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000317_340 0.0848513561 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000580_080 0.0848570873 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
8 Hb_143629_230 0.0895784309 - - ring finger, putative [Ricinus communis]
9 Hb_001383_060 0.0900867032 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
10 Hb_000190_060 0.0905398611 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
11 Hb_001840_120 0.0908339001 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
12 Hb_001818_020 0.0924041786 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
13 Hb_001538_120 0.0928109653 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
14 Hb_011139_020 0.0928654994 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
15 Hb_000061_480 0.0931502098 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
16 Hb_012515_010 0.0935556728 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
17 Hb_000526_150 0.0942152793 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
18 Hb_000465_060 0.0946871309 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
19 Hb_089839_020 0.0948958117 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
20 Hb_003927_130 0.094961052 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]

Gene co-expression network

sample Hb_171900_050 Hb_171900_050 Hb_010810_020 Hb_010810_020 Hb_171900_050--Hb_010810_020 Hb_000545_150 Hb_000545_150 Hb_171900_050--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_171900_050--Hb_001584_070 Hb_000365_380 Hb_000365_380 Hb_171900_050--Hb_000365_380 Hb_000317_340 Hb_000317_340 Hb_171900_050--Hb_000317_340 Hb_000580_080 Hb_000580_080 Hb_171900_050--Hb_000580_080 Hb_009851_100 Hb_009851_100 Hb_010810_020--Hb_009851_100 Hb_010810_020--Hb_000317_340 Hb_001638_260 Hb_001638_260 Hb_010810_020--Hb_001638_260 Hb_011161_050 Hb_011161_050 Hb_010810_020--Hb_011161_050 Hb_000086_550 Hb_000086_550 Hb_010810_020--Hb_000086_550 Hb_012573_070 Hb_012573_070 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_000545_150--Hb_001638_260 Hb_001584_070--Hb_000465_060 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_004117_290 Hb_004117_290 Hb_000365_380--Hb_004117_290 Hb_000365_380--Hb_000317_340 Hb_143629_230 Hb_143629_230 Hb_000365_380--Hb_143629_230 Hb_025193_050 Hb_025193_050 Hb_000365_380--Hb_025193_050 Hb_000365_380--Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_000317_340--Hb_143629_230 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_000580_080--Hb_000465_060 Hb_089839_020 Hb_089839_020 Hb_000580_080--Hb_089839_020 Hb_000580_080--Hb_001824_070 Hb_000580_080--Hb_001584_070 Hb_001235_210 Hb_001235_210 Hb_000580_080--Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_000580_080--Hb_001477_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4776 2.89737 4.27473 6.85852 19.0228 22.7049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2171 46.3178 15.7376 6.81653 5.30255

CAGE analysis