Hb_171900_060

Information

Type -
Description -
Location Contig171900: 21667-22266
Sequence    

Annotation

kegg
ID rcu:RCOM_1609070
description hypothetical protein
nr
ID XP_012083855.1
description PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K984
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14606 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16105: 21540-35910 , PASA_asmbl_16106: 23209-23633
cDNA
(Sanger)
(ID:Location)		 020_H02.ab1: 21540-35910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_060 0.0 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
2 Hb_002105_100 0.0884227122 - - protein with unknown function [Ricinus communis]
3 Hb_001234_070 0.0975285655 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
4 Hb_021068_040 0.0997534102 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
5 Hb_000359_150 0.1051078989 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
6 Hb_003567_030 0.1058178698 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
7 Hb_006846_130 0.1064016988 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
8 Hb_000826_100 0.1087559438 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
9 Hb_000261_160 0.1109262733 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
10 Hb_000327_230 0.1113878773 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
11 Hb_003582_070 0.1126976297 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000510_300 0.1142090267 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
13 Hb_008071_020 0.1145291921 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
14 Hb_000327_380 0.1149115422 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
15 Hb_000805_240 0.115901039 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
16 Hb_002171_060 0.116080351 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002301_150 0.1165799022 - - Drought-responsive family protein [Theobroma cacao]
18 Hb_000696_160 0.1171308425 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
19 Hb_000849_130 0.1178828116 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
20 Hb_000005_090 0.1194471141 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]

Gene co-expression network

sample Hb_171900_060 Hb_171900_060 Hb_002105_100 Hb_002105_100 Hb_171900_060--Hb_002105_100 Hb_001234_070 Hb_001234_070 Hb_171900_060--Hb_001234_070 Hb_021068_040 Hb_021068_040 Hb_171900_060--Hb_021068_040 Hb_000359_150 Hb_000359_150 Hb_171900_060--Hb_000359_150 Hb_003567_030 Hb_003567_030 Hb_171900_060--Hb_003567_030 Hb_006846_130 Hb_006846_130 Hb_171900_060--Hb_006846_130 Hb_000002_380 Hb_000002_380 Hb_002105_100--Hb_000002_380 Hb_154948_040 Hb_154948_040 Hb_002105_100--Hb_154948_040 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_003582_070 Hb_003582_070 Hb_001234_070--Hb_003582_070 Hb_000193_110 Hb_000193_110 Hb_001234_070--Hb_000193_110 Hb_004041_020 Hb_004041_020 Hb_001234_070--Hb_004041_020 Hb_003362_030 Hb_003362_030 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_021068_040--Hb_000805_240 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_006615_240 Hb_006615_240 Hb_021068_040--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_003151_040 Hb_003151_040 Hb_021068_040--Hb_003151_040 Hb_000261_160 Hb_000261_160 Hb_000359_150--Hb_000261_160 Hb_000359_150--Hb_002171_060 Hb_001016_150 Hb_001016_150 Hb_000359_150--Hb_001016_150 Hb_000599_260 Hb_000599_260 Hb_000359_150--Hb_000599_260 Hb_000690_190 Hb_000690_190 Hb_000359_150--Hb_000690_190 Hb_000359_150--Hb_004041_020 Hb_003567_030--Hb_002105_100 Hb_002298_030 Hb_002298_030 Hb_003567_030--Hb_002298_030 Hb_000025_630 Hb_000025_630 Hb_003567_030--Hb_000025_630 Hb_000510_300 Hb_000510_300 Hb_003567_030--Hb_000510_300 Hb_012796_020 Hb_012796_020 Hb_003567_030--Hb_012796_020 Hb_002301_150 Hb_002301_150 Hb_006846_130--Hb_002301_150 Hb_000076_220 Hb_000076_220 Hb_006846_130--Hb_000076_220 Hb_000130_270 Hb_000130_270 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2447 7.6909 11.9448 19.9603 4.92848 6.41133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0454 22.9345 8.7441 7.74557 5.06803

CAGE analysis