Hb_171900_080

Information

Type transcription factor
Description TF Family: mTERF
Location Contig171900: 24978-26476
Sequence    

Annotation

kegg
ID rcu:RCOM_1608850
description hypothetical protein
nr
ID XP_002511611.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RD22
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1608850 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16102: 24669-26127 , PASA_asmbl_16103: 26164-26441 , PASA_asmbl_16105: 21540-35910
cDNA
(Sanger)
(ID:Location)		 020_H02.ab1: 21540-35910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_080 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_010795_010 0.0737571206 - - protein with unknown function [Ricinus communis]
3 Hb_002518_140 0.0780440002 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
4 Hb_001277_330 0.0864239442 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
5 Hb_003266_130 0.0873148123 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_000123_120 0.0881016439 - - actin depolymerizing factor 4 [Hevea brasiliensis]
7 Hb_178968_110 0.0918094178 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
8 Hb_002686_290 0.0926132182 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
9 Hb_011316_040 0.094100069 - - peptidase, putative [Ricinus communis]
10 Hb_000179_210 0.0944765698 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
11 Hb_000069_110 0.0955386193 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
12 Hb_000510_320 0.0983332574 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
13 Hb_006541_030 0.1005459297 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
14 Hb_001828_140 0.1006977855 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
15 Hb_011867_010 0.1014414104 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
16 Hb_000988_080 0.1022667604 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000155_190 0.102966936 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000614_230 0.103501516 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
19 Hb_000030_010 0.1043652665 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
20 Hb_010863_080 0.1048958559 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_171900_080 Hb_171900_080 Hb_010795_010 Hb_010795_010 Hb_171900_080--Hb_010795_010 Hb_002518_140 Hb_002518_140 Hb_171900_080--Hb_002518_140 Hb_001277_330 Hb_001277_330 Hb_171900_080--Hb_001277_330 Hb_003266_130 Hb_003266_130 Hb_171900_080--Hb_003266_130 Hb_000123_120 Hb_000123_120 Hb_171900_080--Hb_000123_120 Hb_178968_110 Hb_178968_110 Hb_171900_080--Hb_178968_110 Hb_010795_010--Hb_002518_140 Hb_000030_010 Hb_000030_010 Hb_010795_010--Hb_000030_010 Hb_010795_010--Hb_000123_120 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_019654_100 Hb_019654_100 Hb_010795_010--Hb_019654_100 Hb_002518_140--Hb_001277_330 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_003266_130--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_003266_130--Hb_010172_050 Hb_000008_470 Hb_000008_470 Hb_000123_120--Hb_000008_470 Hb_000754_060 Hb_000754_060 Hb_000123_120--Hb_000754_060 Hb_003862_050 Hb_003862_050 Hb_000123_120--Hb_003862_050 Hb_010381_070 Hb_010381_070 Hb_000123_120--Hb_010381_070 Hb_011224_110 Hb_011224_110 Hb_000123_120--Hb_011224_110 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_178968_110--Hb_000614_230 Hb_178968_110--Hb_010172_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4879 7.98964 5.03634 7.35405 17.7368 14.2341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3059 22.2258 25.314 3.81609 7.04579

CAGE analysis