Hb_172221_010

Information

Type -
Description -
Location Contig172221: 8019-9950
Sequence    

Annotation

kegg
ID rcu:RCOM_0803120
description 60S ribosomal protein L37, putative
nr
ID XP_012077456.1
description PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
swissprot
ID Q8LFH7
description 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1
trembl
ID A0A067KR06
description Ribosomal protein L37 OS=Jatropha curcas GN=JCGZ_07790 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16241: 7982-9802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172221_010 0.0 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
2 Hb_000329_020 0.0435494203 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
3 Hb_000042_260 0.0586510174 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
4 Hb_026398_010 0.0593067733 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
5 Hb_002909_130 0.0614597197 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_012395_130 0.0724763079 - - Os02g0814700 [Oryza sativa Japonica Group]
7 Hb_002588_010 0.0768300691 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
8 Hb_019516_100 0.0775109848 - - 40S ribosomal protein S14, putative [Ricinus communis]
9 Hb_001085_270 0.0783484186 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
10 Hb_011311_010 0.0799307947 - - 60S ribosomal protein L27C [Hevea brasiliensis]
11 Hb_002660_030 0.082424566 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008948_050 0.08547059 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
13 Hb_000062_390 0.0873358961 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
14 Hb_007944_040 0.0922737689 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
15 Hb_002248_100 0.0924431685 - - hypothetical protein VITISV_027197 [Vitis vinifera]
16 Hb_000172_420 0.0925300241 - - 60S ribosomal protein L30, putative [Ricinus communis]
17 Hb_000881_080 0.0938791936 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000915_120 0.094093408 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
19 Hb_001158_230 0.0943883125 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
20 Hb_000203_020 0.0953455103 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_172221_010 Hb_172221_010 Hb_000329_020 Hb_000329_020 Hb_172221_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_172221_010--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_172221_010--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010 Hb_000329_020--Hb_000042_260 Hb_000329_020--Hb_026398_010 Hb_000329_020--Hb_002909_130 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_000042_260--Hb_002588_010 Hb_000042_260--Hb_002909_130 Hb_000042_260--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_002588_010 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_004754_070 Hb_004754_070 Hb_012395_130--Hb_004754_070 Hb_011377_020 Hb_011377_020 Hb_012395_130--Hb_011377_020 Hb_001780_050 Hb_001780_050 Hb_012395_130--Hb_001780_050 Hb_000997_120 Hb_000997_120 Hb_012395_130--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_012395_130--Hb_007120_090 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.7419 22.8909 30.7998 41.7082 39.2072 56.1476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.607 331.248 76.8146 72.635 29.0461

CAGE analysis