Hb_172256_010

Information

Type -
Description -
Location Contig172256: 1499-2343
Sequence    

Annotation

kegg
ID rcu:RCOM_0574620
description isoleucyl tRNA synthetase, putative (EC:6.1.1.5)
nr
ID XP_012075814.1
description PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID P36422
description Isoleucine--tRNA ligase OS=Tetrahymena thermophila GN=ILSA PE=3 SV=1
trembl
ID A0A067KSI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10564 PE=3 SV=1
Gene Ontology
ID GO:0005829
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172256_010 0.0 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_000211_080 0.0679375297 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_004102_130 0.0975688167 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000779_040 0.1074491823 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
5 Hb_003673_020 0.108252752 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
6 Hb_000890_220 0.1107079279 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
7 Hb_000016_180 0.111133935 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
8 Hb_000250_080 0.1137675084 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
9 Hb_000211_090 0.119556114 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
10 Hb_000185_090 0.1252429322 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
11 Hb_002918_070 0.1290353628 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
12 Hb_004531_090 0.1290425984 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_174865_050 0.1324884353 - - PREDICTED: neuroguidin [Jatropha curcas]
14 Hb_000792_110 0.1338508845 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
15 Hb_003666_050 0.1357868187 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
16 Hb_000211_070 0.139112987 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
17 Hb_035360_010 0.1413534728 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
18 Hb_000608_340 0.1443227411 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
19 Hb_001486_120 0.145395118 - - PREDICTED: importin-5-like [Jatropha curcas]
20 Hb_009421_030 0.146351418 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]

Gene co-expression network

sample Hb_172256_010 Hb_172256_010 Hb_000211_080 Hb_000211_080 Hb_172256_010--Hb_000211_080 Hb_004102_130 Hb_004102_130 Hb_172256_010--Hb_004102_130 Hb_000779_040 Hb_000779_040 Hb_172256_010--Hb_000779_040 Hb_003673_020 Hb_003673_020 Hb_172256_010--Hb_003673_020 Hb_000890_220 Hb_000890_220 Hb_172256_010--Hb_000890_220 Hb_000016_180 Hb_000016_180 Hb_172256_010--Hb_000016_180 Hb_000211_080--Hb_003673_020 Hb_000211_080--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_080--Hb_000792_110 Hb_035360_010 Hb_035360_010 Hb_000211_080--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000211_080--Hb_000211_090 Hb_004102_130--Hb_000016_180 Hb_004102_130--Hb_003673_020 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000176_170 Hb_000176_170 Hb_004102_130--Hb_000176_170 Hb_000779_040--Hb_000890_220 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_000779_040--Hb_004531_090 Hb_000779_040--Hb_003673_020 Hb_003673_020--Hb_035360_010 Hb_003673_020--Hb_000211_090 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000890_220--Hb_000211_090 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_000890_220--Hb_000792_110 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_012760_200 Hb_012760_200 Hb_000890_220--Hb_012760_200 Hb_113216_010 Hb_113216_010 Hb_000016_180--Hb_113216_010 Hb_000185_090 Hb_000185_090 Hb_000016_180--Hb_000185_090 Hb_000016_180--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000016_180--Hb_002918_070 Hb_000016_180--Hb_000792_110 Hb_000213_060 Hb_000213_060 Hb_000016_180--Hb_000213_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.192 30.2447 4.80785 5.34231 201.5 190.673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.8796 6.33973 33.5726 30.7014 19.4336

CAGE analysis