Hb_172388_010

Information

Type -
Description -
Location Contig172388: 1-510
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID XP_012071389.1
description PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172388_010 0.0 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
2 Hb_076795_010 0.252984573 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
3 Hb_012098_190 0.2875953174 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_005803_040 0.2878181537 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
5 Hb_138585_020 0.3006533727 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008730_010 0.3043048378 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000307_230 0.3090063481 - - -
8 Hb_077935_010 0.3125966972 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000144_040 0.3136484534 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
10 Hb_001153_130 0.3213304471 - - unnamed protein product [Vitis vinifera]
11 Hb_011986_010 0.3276155027 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_008326_010 0.3334471754 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_000031_350 0.3388671673 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
14 Hb_001188_120 0.3395367559 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
15 Hb_002599_040 0.3496328105 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
16 Hb_010883_130 0.350313883 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
17 Hb_002360_020 0.3512308087 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001114_040 0.3553035553 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
19 Hb_012753_010 0.3562051495 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_005511_090 0.3562973061 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_172388_010 Hb_172388_010 Hb_076795_010 Hb_076795_010 Hb_172388_010--Hb_076795_010 Hb_012098_190 Hb_012098_190 Hb_172388_010--Hb_012098_190 Hb_005803_040 Hb_005803_040 Hb_172388_010--Hb_005803_040 Hb_138585_020 Hb_138585_020 Hb_172388_010--Hb_138585_020 Hb_008730_010 Hb_008730_010 Hb_172388_010--Hb_008730_010 Hb_000307_230 Hb_000307_230 Hb_172388_010--Hb_000307_230 Hb_000031_350 Hb_000031_350 Hb_076795_010--Hb_000031_350 Hb_076795_010--Hb_012098_190 Hb_001188_120 Hb_001188_120 Hb_076795_010--Hb_001188_120 Hb_000144_040 Hb_000144_040 Hb_076795_010--Hb_000144_040 Hb_076795_010--Hb_008730_010 Hb_002360_020 Hb_002360_020 Hb_012098_190--Hb_002360_020 Hb_012098_190--Hb_001188_120 Hb_012098_190--Hb_000144_040 Hb_181026_010 Hb_181026_010 Hb_012098_190--Hb_181026_010 Hb_012098_190--Hb_000031_350 Hb_010883_130 Hb_010883_130 Hb_005803_040--Hb_010883_130 Hb_000340_050 Hb_000340_050 Hb_005803_040--Hb_000340_050 Hb_000764_040 Hb_000764_040 Hb_005803_040--Hb_000764_040 Hb_005803_040--Hb_000307_230 Hb_005803_040--Hb_000144_040 Hb_138585_020--Hb_076795_010 Hb_088410_010 Hb_088410_010 Hb_138585_020--Hb_088410_010 Hb_003436_030 Hb_003436_030 Hb_138585_020--Hb_003436_030 Hb_002122_020 Hb_002122_020 Hb_138585_020--Hb_002122_020 Hb_002493_010 Hb_002493_010 Hb_138585_020--Hb_002493_010 Hb_000101_150 Hb_000101_150 Hb_008730_010--Hb_000101_150 Hb_002599_040 Hb_002599_040 Hb_008730_010--Hb_002599_040 Hb_043708_010 Hb_043708_010 Hb_008730_010--Hb_043708_010 Hb_106815_010 Hb_106815_010 Hb_008730_010--Hb_106815_010 Hb_000399_010 Hb_000399_010 Hb_008730_010--Hb_000399_010 Hb_000307_230--Hb_002599_040 Hb_000307_230--Hb_000764_040 Hb_000307_230--Hb_106815_010 Hb_000614_270 Hb_000614_270 Hb_000307_230--Hb_000614_270 Hb_000307_230--Hb_010883_130 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0455765 0 0.104509 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.102089 0.173643 0.0847273 0.383363

CAGE analysis