Hb_172426_030

Information

Type -
Description -
Location Contig172426: 16600-20284
Sequence    

Annotation

kegg
ID rcu:RCOM_1288590
description acetylglucosaminyltransferase, putative (EC:2.4.2.26)
nr
ID XP_002531062.1
description acetylglucosaminyltransferase, putative [Ricinus communis]
swissprot
ID Q5QQ55
description Xylosyltransferase OS=Ciona intestinalis GN=xt PE=2 SV=1
trembl
ID B9SYJ3
description Acetylglucosaminyltransferase, putative OS=Ricinus communis GN=RCOM_1288590 PE=4 SV=1
Gene Ontology
ID GO:0005794
description xylosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16286: 16244-20173 , PASA_asmbl_16290: 20206-20337 , PASA_asmbl_16292: 20592-20797
cDNA
(Sanger)
(ID:Location)		 002_A16.ab1: 16247-16902

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172426_030 0.0 - - acetylglucosaminyltransferase, putative [Ricinus communis]
2 Hb_189216_010 0.0731023008 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
3 Hb_002471_090 0.0787200781 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
4 Hb_000704_030 0.0819442794 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
5 Hb_012262_030 0.0880534906 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
6 Hb_000367_090 0.0889997513 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
7 Hb_000227_160 0.091750478 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
8 Hb_000684_040 0.0919829472 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
9 Hb_002615_150 0.0920113621 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
10 Hb_007472_070 0.0937397606 - - cir, putative [Ricinus communis]
11 Hb_007839_020 0.0938908175 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006637_030 0.0940523757 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
13 Hb_008748_030 0.095249437 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006824_010 0.0960341395 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
15 Hb_005653_070 0.0978148248 - - K+ transport growth defect-like protein [Hevea brasiliensis]
16 Hb_007904_300 0.0980596114 - - copine, putative [Ricinus communis]
17 Hb_003376_180 0.0989476591 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
18 Hb_000567_230 0.0989698483 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
19 Hb_000731_200 0.0992111253 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
20 Hb_005563_070 0.0992277081 - - PREDICTED: uncharacterized protein LOC105630108 [Jatropha curcas]

Gene co-expression network

sample Hb_172426_030 Hb_172426_030 Hb_189216_010 Hb_189216_010 Hb_172426_030--Hb_189216_010 Hb_002471_090 Hb_002471_090 Hb_172426_030--Hb_002471_090 Hb_000704_030 Hb_000704_030 Hb_172426_030--Hb_000704_030 Hb_012262_030 Hb_012262_030 Hb_172426_030--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_172426_030--Hb_000367_090 Hb_000227_160 Hb_000227_160 Hb_172426_030--Hb_000227_160 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_008748_030 Hb_008748_030 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_000521_240 Hb_000521_240 Hb_002471_090--Hb_000521_240 Hb_001635_190 Hb_001635_190 Hb_002471_090--Hb_001635_190 Hb_002471_090--Hb_000778_010 Hb_011218_090 Hb_011218_090 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_000120_810 Hb_000120_810 Hb_000704_030--Hb_000120_810 Hb_000704_030--Hb_189216_010 Hb_000704_030--Hb_005563_070 Hb_007839_020 Hb_007839_020 Hb_000704_030--Hb_007839_020 Hb_026198_010 Hb_026198_010 Hb_000704_030--Hb_026198_010 Hb_012262_030--Hb_000227_160 Hb_000023_300 Hb_000023_300 Hb_012262_030--Hb_000023_300 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_012262_030--Hb_189216_010 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_000046_170 Hb_000046_170 Hb_000367_090--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000367_090--Hb_028487_160 Hb_000367_090--Hb_000227_160 Hb_002357_060 Hb_002357_060 Hb_000367_090--Hb_002357_060 Hb_004705_170 Hb_004705_170 Hb_000367_090--Hb_004705_170 Hb_000367_090--Hb_189216_010 Hb_000227_160--Hb_008748_030 Hb_000227_160--Hb_028487_160 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35864 5.88433 5.41412 8.44197 1.95082 1.60945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.30994 4.76482 3.81393 6.68835 5.95386

CAGE analysis