Hb_172426_040

Information

Type -
Description -
Location Contig172426: 25305-31850
Sequence    

Annotation

kegg
ID rcu:RCOM_1288580
description ELL-associated factor, putative
nr
ID XP_012072189.1
description PREDICTED: ELL-associated factor 1 [Jatropha curcas]
swissprot
ID Q5ZHP7
description ELL-associated factor 2 OS=Gallus gallus GN=EAF2 PE=2 SV=1
trembl
ID A0A067L0K4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04673 PE=4 SV=1
Gene Ontology
ID GO:0032783
description ell-associated factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16293: 25340-31677
cDNA
(Sanger)
(ID:Location)		 012_I15.ab1: 25897-31600

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172426_040 0.0 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
2 Hb_003918_010 0.0508132604 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
3 Hb_003787_010 0.058313673 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
4 Hb_006059_050 0.0614700103 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
5 Hb_000020_060 0.0632179573 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
6 Hb_000982_090 0.0651165076 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
7 Hb_004116_190 0.0651491179 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
8 Hb_005846_040 0.0658431156 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
9 Hb_032202_190 0.0701970618 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
10 Hb_003125_010 0.0704879001 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
11 Hb_003151_040 0.0707016897 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
12 Hb_001140_370 0.0709671453 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
13 Hb_002995_020 0.0733128421 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
14 Hb_003092_040 0.0740041123 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
15 Hb_024071_020 0.0748361687 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
16 Hb_000221_160 0.0757016967 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
17 Hb_002061_040 0.0763971552 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
18 Hb_012053_070 0.0768077845 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
19 Hb_159809_020 0.0768270131 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_065525_020 0.0783949783 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_172426_040 Hb_172426_040 Hb_003918_010 Hb_003918_010 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_005846_040 Hb_005846_040 Hb_003787_010--Hb_005846_040 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_003151_040 Hb_003151_040 Hb_006059_050--Hb_003151_040 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_000020_060--Hb_002995_020 Hb_000020_060--Hb_004116_190 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_000982_090--Hb_001140_370 Hb_001124_090 Hb_001124_090 Hb_000982_090--Hb_001124_090 Hb_000982_090--Hb_006059_050 Hb_001016_030 Hb_001016_030 Hb_000982_090--Hb_001016_030 Hb_009051_030 Hb_009051_030 Hb_000982_090--Hb_009051_030 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_004116_190--Hb_005846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.3542 23.8075 29.8337 34.3018 27.4792 41.6919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.4262 64.4008 48.2595 35.9999 20.633

CAGE analysis