Hb_172486_010

Information

Type -
Description -
Location Contig172486: 1169-3356
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172486_010 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_008484_020 0.1391755735 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_149345_010 0.1400473369 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
4 Hb_002620_040 0.1520603209 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
5 Hb_001459_020 0.152975965 - - ankyrin repeat protein [Bruguiera gymnorhiza]
6 Hb_003291_030 0.1598048921 - - Gag-pol protein, putative [Solanum demissum]
7 Hb_029510_060 0.1635802245 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
8 Hb_057880_020 0.1649593318 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
9 Hb_001295_080 0.1669669334 - - Protein KES1, putative [Ricinus communis]
10 Hb_093388_010 0.1669823574 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
11 Hb_000462_160 0.1724067504 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_006040_140 0.1730709761 - - hypothetical protein NitaMp105 [Nicotiana tabacum]
13 Hb_089305_040 0.1736085097 - - -
14 Hb_000139_030 0.1784162217 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
15 Hb_010863_070 0.1813182416 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
16 Hb_000951_070 0.181815668 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
17 Hb_005194_050 0.1843324872 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
18 Hb_011649_030 0.1857027497 - - hypothetical protein [Vitis hybrid cultivar]
19 Hb_016734_040 0.1876537669 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_005779_090 0.189106599 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]

Gene co-expression network

sample Hb_172486_010 Hb_172486_010 Hb_008484_020 Hb_008484_020 Hb_172486_010--Hb_008484_020 Hb_149345_010 Hb_149345_010 Hb_172486_010--Hb_149345_010 Hb_002620_040 Hb_002620_040 Hb_172486_010--Hb_002620_040 Hb_001459_020 Hb_001459_020 Hb_172486_010--Hb_001459_020 Hb_003291_030 Hb_003291_030 Hb_172486_010--Hb_003291_030 Hb_029510_060 Hb_029510_060 Hb_172486_010--Hb_029510_060 Hb_008484_020--Hb_003291_030 Hb_003540_070 Hb_003540_070 Hb_008484_020--Hb_003540_070 Hb_001946_130 Hb_001946_130 Hb_008484_020--Hb_001946_130 Hb_011649_030 Hb_011649_030 Hb_008484_020--Hb_011649_030 Hb_007793_030 Hb_007793_030 Hb_008484_020--Hb_007793_030 Hb_149345_010--Hb_001459_020 Hb_093388_010 Hb_093388_010 Hb_149345_010--Hb_093388_010 Hb_016734_040 Hb_016734_040 Hb_149345_010--Hb_016734_040 Hb_149345_010--Hb_029510_060 Hb_001542_010 Hb_001542_010 Hb_149345_010--Hb_001542_010 Hb_000462_160 Hb_000462_160 Hb_002620_040--Hb_000462_160 Hb_057880_020 Hb_057880_020 Hb_002620_040--Hb_057880_020 Hb_000139_030 Hb_000139_030 Hb_002620_040--Hb_000139_030 Hb_001295_080 Hb_001295_080 Hb_002620_040--Hb_001295_080 Hb_002620_040--Hb_001459_020 Hb_002188_150 Hb_002188_150 Hb_002620_040--Hb_002188_150 Hb_007718_040 Hb_007718_040 Hb_001459_020--Hb_007718_040 Hb_001459_020--Hb_057880_020 Hb_089305_040 Hb_089305_040 Hb_001459_020--Hb_089305_040 Hb_000920_340 Hb_000920_340 Hb_001459_020--Hb_000920_340 Hb_003291_030--Hb_011649_030 Hb_003291_030--Hb_001946_130 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_023738_010 Hb_023738_010 Hb_029510_060--Hb_023738_010 Hb_029510_060--Hb_093388_010 Hb_119832_010 Hb_119832_010 Hb_029510_060--Hb_119832_010 Hb_001250_030 Hb_001250_030 Hb_029510_060--Hb_001250_030 Hb_000951_070 Hb_000951_070 Hb_029510_060--Hb_000951_070 Hb_003796_010 Hb_003796_010 Hb_029510_060--Hb_003796_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120833 0.0397369 0.126188 0 0.0102569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0240774 0 0 0.0226237 0.759344

CAGE analysis