Hb_172632_040

Information

Type -
Description -
Location Contig172632: 17586-24852
Sequence    

Annotation

kegg
ID atr:s00025p00194920
description AMTR_s00025p00194920; hypothetical protein
nr
ID XP_011625763.1
description PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
swissprot
ID Q9FWR2
description Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=3 SV=1
trembl
ID W1PXE6
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00194920 PE=3 SV=1
Gene Ontology
ID GO:0005773
description pyrophosphate-energized membrane proton pump 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16341: 17488-24646 , PASA_asmbl_16342: 17507-18629
cDNA
(Sanger)
(ID:Location)		 003_O10.ab1: 17488-19924 , 016_J21.ab1: 17477-19361

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_040 0.0 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
2 Hb_000139_370 0.056456631 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
3 Hb_001898_210 0.0759209527 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
4 Hb_000915_260 0.0885443703 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
5 Hb_000362_150 0.0908808411 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
6 Hb_000254_090 0.0911168726 - - PREDICTED: la protein 2 [Jatropha curcas]
7 Hb_000110_190 0.0918525514 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
8 Hb_000300_050 0.0935788048 - - conserved hypothetical protein [Ricinus communis]
9 Hb_152202_010 0.0937700973 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
10 Hb_002273_120 0.0968058057 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
11 Hb_000004_030 0.0973771265 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
12 Hb_003375_070 0.097900564 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
13 Hb_007919_100 0.0988678345 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
14 Hb_007317_140 0.0990336993 - - expressed protein, putative [Ricinus communis]
15 Hb_032050_040 0.0992638132 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
16 Hb_000074_080 0.100686747 - - unknown [Populus trichocarpa]
17 Hb_001442_040 0.1018805075 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
18 Hb_009328_020 0.1021995041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001279_030 0.1032489526 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
20 Hb_000872_010 0.1043135518 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]

Gene co-expression network

sample Hb_172632_040 Hb_172632_040 Hb_000139_370 Hb_000139_370 Hb_172632_040--Hb_000139_370 Hb_001898_210 Hb_001898_210 Hb_172632_040--Hb_001898_210 Hb_000915_260 Hb_000915_260 Hb_172632_040--Hb_000915_260 Hb_000362_150 Hb_000362_150 Hb_172632_040--Hb_000362_150 Hb_000254_090 Hb_000254_090 Hb_172632_040--Hb_000254_090 Hb_000110_190 Hb_000110_190 Hb_172632_040--Hb_000110_190 Hb_003375_070 Hb_003375_070 Hb_000139_370--Hb_003375_070 Hb_000139_370--Hb_000915_260 Hb_010174_040 Hb_010174_040 Hb_000139_370--Hb_010174_040 Hb_007632_240 Hb_007632_240 Hb_000139_370--Hb_007632_240 Hb_002273_120 Hb_002273_120 Hb_000139_370--Hb_002273_120 Hb_009328_020 Hb_009328_020 Hb_001898_210--Hb_009328_020 Hb_152202_010 Hb_152202_010 Hb_001898_210--Hb_152202_010 Hb_000479_250 Hb_000479_250 Hb_001898_210--Hb_000479_250 Hb_001279_030 Hb_001279_030 Hb_001898_210--Hb_001279_030 Hb_000022_020 Hb_000022_020 Hb_001898_210--Hb_000022_020 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_009529_030 Hb_009529_030 Hb_000362_150--Hb_009529_030 Hb_001496_070 Hb_001496_070 Hb_000362_150--Hb_001496_070 Hb_000362_150--Hb_152202_010 Hb_000004_030 Hb_000004_030 Hb_000362_150--Hb_000004_030 Hb_032050_040 Hb_032050_040 Hb_000362_150--Hb_032050_040 Hb_002493_020 Hb_002493_020 Hb_000362_150--Hb_002493_020 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_054865_150 Hb_054865_150 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_000872_010 Hb_000872_010 Hb_000110_190--Hb_000872_010 Hb_002968_080 Hb_002968_080 Hb_000110_190--Hb_002968_080 Hb_001862_140 Hb_001862_140 Hb_000110_190--Hb_001862_140 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_002391_290 Hb_002391_290 Hb_000110_190--Hb_002391_290 Hb_056691_060 Hb_056691_060 Hb_000110_190--Hb_056691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04245 3.9523 7.49451 13.4204 14.6456 17.2066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6569 6.82544 9.87953 13.1045 16.4188

CAGE analysis