Hb_172632_080

Information

Type -
Description -
Location Contig172632: 41392-54472
Sequence    

Annotation

kegg
ID cit:102613021
description uncharacterized LOC102613021
nr
ID XP_011046559.1
description PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
swissprot
ID Q00416
description Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2
trembl
ID V4VBH5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030470mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16348: 41419-44257 , PASA_asmbl_16350: 44338-45528 , PASA_asmbl_16352: 45922-46362 , PASA_asmbl_16353: 46715-47344 , PASA_asmbl_16355: 48986-50263 , PASA_asmbl_16356: 50624-51132 , PASA_asmbl_16357: 51717-51980 , PASA_asmbl_16358: 54135-54548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_080 0.0 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
2 Hb_009218_010 0.0579553027 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
3 Hb_000072_220 0.0600530621 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
4 Hb_001199_100 0.0639241903 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
5 Hb_009548_020 0.0642688847 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_000457_260 0.066155481 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
7 Hb_188063_020 0.0669454905 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001198_100 0.0678144251 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
9 Hb_028912_050 0.0716347797 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
10 Hb_001329_140 0.0724859346 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
11 Hb_006649_050 0.0730686932 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
12 Hb_044728_010 0.0730947119 - - -
13 Hb_009545_100 0.0734859374 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
14 Hb_001675_180 0.076237162 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
15 Hb_000029_050 0.0762667297 - - expressed protein, putative [Ricinus communis]
16 Hb_004225_050 0.0766473791 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_002493_020 0.077649845 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
18 Hb_000225_040 0.0783014781 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
19 Hb_000347_180 0.0790860057 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_002716_130 0.0796121937 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_172632_080 Hb_172632_080 Hb_009218_010 Hb_009218_010 Hb_172632_080--Hb_009218_010 Hb_000072_220 Hb_000072_220 Hb_172632_080--Hb_000072_220 Hb_001199_100 Hb_001199_100 Hb_172632_080--Hb_001199_100 Hb_009548_020 Hb_009548_020 Hb_172632_080--Hb_009548_020 Hb_000457_260 Hb_000457_260 Hb_172632_080--Hb_000457_260 Hb_188063_020 Hb_188063_020 Hb_172632_080--Hb_188063_020 Hb_001341_170 Hb_001341_170 Hb_009218_010--Hb_001341_170 Hb_004143_060 Hb_004143_060 Hb_009218_010--Hb_004143_060 Hb_110291_010 Hb_110291_010 Hb_009218_010--Hb_110291_010 Hb_044728_010 Hb_044728_010 Hb_009218_010--Hb_044728_010 Hb_009218_010--Hb_001199_100 Hb_004221_020 Hb_004221_020 Hb_000072_220--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_000072_220--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_000343_120 Hb_000343_120 Hb_001199_100--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_009545_100 Hb_009545_100 Hb_001199_100--Hb_009545_100 Hb_009548_020--Hb_188063_020 Hb_009548_020--Hb_002835_370 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_004935_030 Hb_004935_030 Hb_000457_260--Hb_004935_030 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040 Hb_004225_050 Hb_004225_050 Hb_188063_020--Hb_004225_050 Hb_002849_100 Hb_002849_100 Hb_188063_020--Hb_002849_100 Hb_028912_050 Hb_028912_050 Hb_188063_020--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_188063_020--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_188063_020--Hb_004963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44306 4.22357 2.38727 4.29123 5.40855 7.69252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0555 4.62212 5.78176 4.75629 5.75053

CAGE analysis