Hb_172632_100

Information

Type -
Description -
Location Contig172632: 62983-69702
Sequence    

Annotation

kegg
ID pmum:103327439
description reticulon-like protein B22
nr
ID XP_012087311.1
description PREDICTED: reticulon-like protein B22 [Jatropha curcas]
swissprot
ID Q8GWH5
description Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1
trembl
ID A0A067JYG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16361: 63003-69494 , PASA_asmbl_16362: 64071-64465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_100 0.0 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
2 Hb_001318_280 0.0482606975 - - Protein FAM18B, putative [Ricinus communis]
3 Hb_011628_060 0.0682307746 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
4 Hb_001268_240 0.0706435364 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
5 Hb_000081_160 0.075618635 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
6 Hb_008616_050 0.0778050412 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
7 Hb_001599_040 0.0779706714 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
8 Hb_003994_230 0.0791033445 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
9 Hb_007878_010 0.0795548727 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
10 Hb_001279_150 0.0802992602 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
11 Hb_001366_370 0.0808629782 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
12 Hb_002641_060 0.0822808454 - - prefoldin subunit, putative [Ricinus communis]
13 Hb_161574_020 0.0843184475 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
14 Hb_000297_160 0.085597795 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
15 Hb_000050_200 0.0858396934 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
16 Hb_002053_140 0.0862457809 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
17 Hb_007676_080 0.0863680016 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
18 Hb_000768_210 0.0874396576 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
19 Hb_000431_170 0.0879365788 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
20 Hb_008847_030 0.0884792986 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_172632_100 Hb_172632_100 Hb_001318_280 Hb_001318_280 Hb_172632_100--Hb_001318_280 Hb_011628_060 Hb_011628_060 Hb_172632_100--Hb_011628_060 Hb_001268_240 Hb_001268_240 Hb_172632_100--Hb_001268_240 Hb_000081_160 Hb_000081_160 Hb_172632_100--Hb_000081_160 Hb_008616_050 Hb_008616_050 Hb_172632_100--Hb_008616_050 Hb_001599_040 Hb_001599_040 Hb_172632_100--Hb_001599_040 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_001318_280--Hb_008616_050 Hb_001318_280--Hb_000081_160 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_002641_060 Hb_002641_060 Hb_001318_280--Hb_002641_060 Hb_000783_010 Hb_000783_010 Hb_011628_060--Hb_000783_010 Hb_003528_030 Hb_003528_030 Hb_011628_060--Hb_003528_030 Hb_011628_060--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_011628_060--Hb_000200_020 Hb_004109_340 Hb_004109_340 Hb_011628_060--Hb_004109_340 Hb_000417_130 Hb_000417_130 Hb_001268_240--Hb_000417_130 Hb_001357_350 Hb_001357_350 Hb_001268_240--Hb_001357_350 Hb_000640_170 Hb_000640_170 Hb_001268_240--Hb_000640_170 Hb_001268_240--Hb_001318_280 Hb_009898_050 Hb_009898_050 Hb_001268_240--Hb_009898_050 Hb_001252_130 Hb_001252_130 Hb_000081_160--Hb_001252_130 Hb_000215_110 Hb_000215_110 Hb_000081_160--Hb_000215_110 Hb_000081_160--Hb_002641_060 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_000081_160--Hb_001599_040 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_008616_050--Hb_009898_050 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_002303_070 Hb_002303_070 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11383 3.12719 7.92639 10.4562 7.59349 8.27647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28887 12.5919 6.05858 9.34235 5.36103

CAGE analysis