Hb_172632_110

Information

Type -
Description -
Location Contig172632: 70799-76501
Sequence    

Annotation

kegg
ID rcu:RCOM_1573690
description pumilio, putative
nr
ID XP_012087312.1
description PREDICTED: pumilio homolog 5 [Jatropha curcas]
swissprot
ID Q9LJX4
description Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
trembl
ID A0A067JM29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22581 PE=4 SV=1
Gene Ontology
ID GO:0005773
description pumilio homolog 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16364: 70804-74729 , PASA_asmbl_16365: 74931-76418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_110 0.0 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
2 Hb_001761_130 0.0559277138 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
3 Hb_006831_040 0.0621908408 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
4 Hb_010174_110 0.0733599228 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
5 Hb_001021_080 0.0742515035 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
6 Hb_002391_210 0.0783549583 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
7 Hb_000002_010 0.0788726368 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
8 Hb_000866_170 0.079890909 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000245_040 0.0822230041 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
10 Hb_000890_210 0.0841771767 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
11 Hb_000107_490 0.0842648633 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
12 Hb_004117_310 0.0869868726 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
13 Hb_004994_220 0.0891412754 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
14 Hb_071130_010 0.0911479318 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_008770_040 0.0915337092 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
16 Hb_004449_080 0.0927114685 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
17 Hb_004724_150 0.0928839722 - - expressed protein, putative [Ricinus communis]
18 Hb_001341_170 0.0934408233 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
19 Hb_002740_110 0.0940582471 - - PREDICTED: phytochrome A [Jatropha curcas]
20 Hb_000739_100 0.0955497938 - - ku P80 DNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_172632_110 Hb_172632_110 Hb_001761_130 Hb_001761_130 Hb_172632_110--Hb_001761_130 Hb_006831_040 Hb_006831_040 Hb_172632_110--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_172632_110--Hb_010174_110 Hb_001021_080 Hb_001021_080 Hb_172632_110--Hb_001021_080 Hb_002391_210 Hb_002391_210 Hb_172632_110--Hb_002391_210 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_002477_090 Hb_002477_090 Hb_001761_130--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_001761_130--Hb_010174_110 Hb_006831_040--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_006831_040--Hb_002740_110 Hb_004994_220 Hb_004994_220 Hb_006831_040--Hb_004994_220 Hb_004117_310 Hb_004117_310 Hb_006831_040--Hb_004117_310 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_010174_110--Hb_004994_220 Hb_008147_070 Hb_008147_070 Hb_001021_080--Hb_008147_070 Hb_001021_080--Hb_002391_210 Hb_000739_100 Hb_000739_100 Hb_001021_080--Hb_000739_100 Hb_001021_080--Hb_006831_040 Hb_001157_090 Hb_001157_090 Hb_001021_080--Hb_001157_090 Hb_002400_410 Hb_002400_410 Hb_002391_210--Hb_002400_410 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_005081_020 Hb_005081_020 Hb_002391_210--Hb_005081_020 Hb_001341_170 Hb_001341_170 Hb_000002_010--Hb_001341_170 Hb_000002_010--Hb_000107_490 Hb_000556_160 Hb_000556_160 Hb_000002_010--Hb_000556_160 Hb_000111_290 Hb_000111_290 Hb_000002_010--Hb_000111_290 Hb_000002_010--Hb_003253_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.789 15.5708 4.39314 10.4321 10.7269 13.1857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.75527 9.55029 16.221 22.0652 9.00688

CAGE analysis