Hb_172632_120

Information

Type -
Description -
Location Contig172632: 78889-83033
Sequence    

Annotation

kegg
ID rcu:RCOM_1573700
description hypothetical protein
nr
ID XP_002513315.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHU6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1573700 PE=4 SV=1
Gene Ontology
ID GO:0005840
description gb: isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16367: 78964-83691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000025_180 0.0630217998 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
3 Hb_000025_630 0.068249979 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
4 Hb_001408_040 0.0694608928 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
5 Hb_000603_150 0.0708838164 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
6 Hb_001959_110 0.0743005791 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
7 Hb_001142_030 0.0762658213 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
8 Hb_002028_210 0.0768004422 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
9 Hb_003750_050 0.0776989893 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
10 Hb_012322_020 0.0782064338 - - -
11 Hb_007441_190 0.0783193864 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
12 Hb_024958_010 0.0785767954 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
13 Hb_000331_090 0.0788910054 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
14 Hb_000580_180 0.0794193361 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000720_040 0.0796807369 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
16 Hb_001584_120 0.0797062431 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
17 Hb_001357_150 0.0800971697 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
18 Hb_000300_500 0.0809918623 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
19 Hb_010381_090 0.0811327728 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
20 Hb_000260_330 0.0815555265 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]

Gene co-expression network

sample Hb_172632_120 Hb_172632_120 Hb_000025_180 Hb_000025_180 Hb_172632_120--Hb_000025_180 Hb_000025_630 Hb_000025_630 Hb_172632_120--Hb_000025_630 Hb_001408_040 Hb_001408_040 Hb_172632_120--Hb_001408_040 Hb_000603_150 Hb_000603_150 Hb_172632_120--Hb_000603_150 Hb_001959_110 Hb_001959_110 Hb_172632_120--Hb_001959_110 Hb_001142_030 Hb_001142_030 Hb_172632_120--Hb_001142_030 Hb_000260_330 Hb_000260_330 Hb_000025_180--Hb_000260_330 Hb_003750_050 Hb_003750_050 Hb_000025_180--Hb_003750_050 Hb_013738_020 Hb_013738_020 Hb_000025_180--Hb_013738_020 Hb_000025_180--Hb_000603_150 Hb_002811_180 Hb_002811_180 Hb_000025_180--Hb_002811_180 Hb_012322_020 Hb_012322_020 Hb_000025_630--Hb_012322_020 Hb_000025_630--Hb_000025_180 Hb_002235_210 Hb_002235_210 Hb_000025_630--Hb_002235_210 Hb_001699_100 Hb_001699_100 Hb_000025_630--Hb_001699_100 Hb_007441_190 Hb_007441_190 Hb_000025_630--Hb_007441_190 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_000313_220 Hb_000313_220 Hb_001959_110--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_001959_110--Hb_000976_140 Hb_000331_090 Hb_000331_090 Hb_001959_110--Hb_000331_090 Hb_163175_010 Hb_163175_010 Hb_001959_110--Hb_163175_010 Hb_000035_470 Hb_000035_470 Hb_001959_110--Hb_000035_470 Hb_001922_150 Hb_001922_150 Hb_001959_110--Hb_001922_150 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_001142_030--Hb_000580_180 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4629 9.2624 10.7453 16.4487 9.30195 13.2718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65027 14.5016 9.26069 10.7272 5.78364

CAGE analysis