Hb_172676_010

Information

Type -
Description -
Location Contig172676: 96-1573
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012065625.1
description PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LHA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16876 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16373: 60-743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172676_010 0.0 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
2 Hb_005539_100 0.0915976052 - - nucleoside transporter, putative [Ricinus communis]
3 Hb_006052_060 0.1062599625 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_002073_020 0.1080290629 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
5 Hb_002874_170 0.1165097422 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
6 Hb_061908_020 0.1178657361 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_001951_240 0.1217317632 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
8 Hb_023386_050 0.127764348 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001141_060 0.1315529338 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
10 Hb_000100_210 0.131857559 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
11 Hb_187005_010 0.1319113064 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
12 Hb_005375_070 0.1320451347 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
13 Hb_149484_010 0.132706539 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
14 Hb_000369_070 0.1335751172 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_003905_040 0.1341549126 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
16 Hb_005000_050 0.1346954042 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
17 Hb_001318_140 0.1356898325 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
18 Hb_003430_070 0.1361322952 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
19 Hb_000402_030 0.1365964401 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
20 Hb_004032_090 0.1414899258 - - PREDICTED: protein AIG1 [Jatropha curcas]

Gene co-expression network

sample Hb_172676_010 Hb_172676_010 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_002073_020 Hb_002073_020 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240 Hb_011381_070 Hb_011381_070 Hb_005539_100--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005539_100--Hb_001158_120 Hb_000366_050 Hb_000366_050 Hb_005539_100--Hb_000366_050 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_001619_160 Hb_001619_160 Hb_006052_060--Hb_001619_160 Hb_003430_070 Hb_003430_070 Hb_006052_060--Hb_003430_070 Hb_001318_140 Hb_001318_140 Hb_006052_060--Hb_001318_140 Hb_149484_010 Hb_149484_010 Hb_006052_060--Hb_149484_010 Hb_001242_190 Hb_001242_190 Hb_006052_060--Hb_001242_190 Hb_002073_020--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_002073_020--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002073_020--Hb_001053_200 Hb_005496_160 Hb_005496_160 Hb_002073_020--Hb_005496_160 Hb_002874_170--Hb_000649_300 Hb_002874_170--Hb_001951_240 Hb_002874_170--Hb_002073_020 Hb_019863_060 Hb_019863_060 Hb_002874_170--Hb_019863_060 Hb_002874_170--Hb_005496_160 Hb_004605_020 Hb_004605_020 Hb_061908_020--Hb_004605_020 Hb_062229_010 Hb_062229_010 Hb_061908_020--Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_061908_020--Hb_001391_100 Hb_027337_030 Hb_027337_030 Hb_061908_020--Hb_027337_030 Hb_006618_020 Hb_006618_020 Hb_061908_020--Hb_006618_020 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_001053_200 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.283203 7.1747 3.63128 2.941 0.312672 0.717534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100888 0.21165 0.247895 1.96601 3.14604

CAGE analysis