Hb_172932_010

Information

Type -
Description -
Location Contig172932: 328-4588
Sequence    

Annotation

kegg
ID rcu:RCOM_1176190
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002517971.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C9U0
description Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
trembl
ID B9RW52
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1176190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16407: 1260-1621 , PASA_asmbl_16408: 3628-4036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172932_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_011534_030 0.057321708 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
3 Hb_001454_190 0.0580218058 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
4 Hb_000617_150 0.0659625555 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
5 Hb_009113_070 0.0764748299 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
6 Hb_086639_030 0.0776884608 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_002235_280 0.0818468384 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
8 Hb_003053_020 0.0821586034 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
9 Hb_114336_020 0.0831450568 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
10 Hb_016901_010 0.0865748052 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
11 Hb_001140_220 0.0904216825 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001699_130 0.0907321764 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
13 Hb_000398_040 0.091523441 - - Auxin response factor, putative [Ricinus communis]
14 Hb_000482_090 0.0920549932 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
15 Hb_005162_070 0.0922389127 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003688_150 0.0953345146 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_019263_020 0.0957728356 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
18 Hb_001619_070 0.0963544876 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
19 Hb_001663_050 0.0963870195 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
20 Hb_004993_050 0.0978955075 - - -

Gene co-expression network

sample Hb_172932_010 Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_172932_010--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_000617_150 Hb_000617_150 Hb_172932_010--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_011534_030--Hb_009113_070 Hb_011534_030--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_016901_010 Hb_016901_010 Hb_001454_190--Hb_016901_010 Hb_001454_190--Hb_000617_150 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_000398_040 Hb_000398_040 Hb_009113_070--Hb_000398_040 Hb_009113_070--Hb_000617_150 Hb_000841_020 Hb_000841_020 Hb_009113_070--Hb_000841_020 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030 Hb_001663_050 Hb_001663_050 Hb_086639_030--Hb_001663_050 Hb_005463_040 Hb_005463_040 Hb_086639_030--Hb_005463_040 Hb_007416_320 Hb_007416_320 Hb_086639_030--Hb_007416_320 Hb_086639_030--Hb_003053_020 Hb_002878_020 Hb_002878_020 Hb_086639_030--Hb_002878_020 Hb_002235_280--Hb_019263_020 Hb_000072_080 Hb_000072_080 Hb_002235_280--Hb_000072_080 Hb_002235_280--Hb_000617_150 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_002235_280--Hb_013607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70902 1.00665 0.700901 1.12101 1.76838 2.10809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35843 3.84912 4.9217 2.34687 1.96063

CAGE analysis