Hb_172970_010

Information

Type -
Description -
Location Contig172970: 895-2221
Sequence    

Annotation

kegg
ID rcu:RCOM_0201120
description hypothetical protein
nr
ID XP_012076513.1
description PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID F6HEJ2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172970_010 0.0 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
2 Hb_012180_030 0.1397447406 - - unnamed protein product [Vitis vinifera]
3 Hb_002419_030 0.1824859607 - - -
4 Hb_004448_090 0.1833279838 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
5 Hb_000959_090 0.1841466238 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002141_040 0.1844485733 - - -
7 Hb_012180_040 0.1849228848 - - hypothetical protein VITISV_042517 [Vitis vinifera]
8 Hb_000136_040 0.1890053052 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
9 Hb_003206_020 0.1905846938 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
10 Hb_028912_040 0.1943102794 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
11 Hb_001912_080 0.1994964201 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
12 Hb_001010_070 0.2034222715 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
13 Hb_000136_060 0.2058488738 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
14 Hb_001780_090 0.2071448696 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
15 Hb_002601_130 0.2130074457 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
16 Hb_001009_100 0.2156878163 - - -
17 Hb_000236_090 0.2187144919 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
18 Hb_004224_020 0.2197960541 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
19 Hb_000470_080 0.2219412274 - - Caldesmon, putative [Ricinus communis]
20 Hb_006663_070 0.2246853635 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]

Gene co-expression network

sample Hb_172970_010 Hb_172970_010 Hb_012180_030 Hb_012180_030 Hb_172970_010--Hb_012180_030 Hb_002419_030 Hb_002419_030 Hb_172970_010--Hb_002419_030 Hb_004448_090 Hb_004448_090 Hb_172970_010--Hb_004448_090 Hb_000959_090 Hb_000959_090 Hb_172970_010--Hb_000959_090 Hb_002141_040 Hb_002141_040 Hb_172970_010--Hb_002141_040 Hb_012180_040 Hb_012180_040 Hb_172970_010--Hb_012180_040 Hb_000136_060 Hb_000136_060 Hb_012180_030--Hb_000136_060 Hb_012180_030--Hb_012180_040 Hb_000158_100 Hb_000158_100 Hb_012180_030--Hb_000158_100 Hb_028912_040 Hb_028912_040 Hb_012180_030--Hb_028912_040 Hb_002092_090 Hb_002092_090 Hb_012180_030--Hb_002092_090 Hb_001010_070 Hb_001010_070 Hb_002419_030--Hb_001010_070 Hb_009270_010 Hb_009270_010 Hb_002419_030--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_002419_030--Hb_000136_040 Hb_002419_030--Hb_004448_090 Hb_000470_080 Hb_000470_080 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020 Hb_008447_040 Hb_008447_040 Hb_004448_090--Hb_008447_040 Hb_127552_060 Hb_127552_060 Hb_004448_090--Hb_127552_060 Hb_004448_090--Hb_028912_040 Hb_000071_180 Hb_000071_180 Hb_004448_090--Hb_000071_180 Hb_000038_080 Hb_000038_080 Hb_004448_090--Hb_000038_080 Hb_001912_080 Hb_001912_080 Hb_000959_090--Hb_001912_080 Hb_000959_090--Hb_000136_040 Hb_001780_090 Hb_001780_090 Hb_000959_090--Hb_001780_090 Hb_000032_470 Hb_000032_470 Hb_000959_090--Hb_000032_470 Hb_007101_200 Hb_007101_200 Hb_000959_090--Hb_007101_200 Hb_000959_090--Hb_003206_020 Hb_000109_030 Hb_000109_030 Hb_002141_040--Hb_000109_030 Hb_002141_040--Hb_012180_040 Hb_002205_050 Hb_002205_050 Hb_002141_040--Hb_002205_050 Hb_032631_040 Hb_032631_040 Hb_002141_040--Hb_032631_040 Hb_009543_020 Hb_009543_020 Hb_002141_040--Hb_009543_020 Hb_006663_070 Hb_006663_070 Hb_012180_040--Hb_006663_070 Hb_012180_040--Hb_002092_090 Hb_012180_040--Hb_000158_100 Hb_012180_040--Hb_000136_060 Hb_058702_010 Hb_058702_010 Hb_012180_040--Hb_058702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.998454 1.52253 0.0575812 0.6981 1.63834 7.26784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.805811 0.678967 1.24082 2.9932 3.85899

CAGE analysis