Hb_173102_010

Information

Type -
Description -
Location Contig173102: 2665-5596
Sequence    

Annotation

kegg
ID rcu:RCOM_0823630
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525841.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q39548
description Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1
trembl
ID B9SIM2
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823630 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173102_010 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_002997_010 0.0175191879 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
3 Hb_001114_290 0.0183997718 - - conserved hypothetical protein [Ricinus communis]
4 Hb_169426_010 0.024106716 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_005780_010 0.0243991168 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_180483_010 0.0249833933 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_008367_020 0.0360780873 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
8 Hb_005747_040 0.0373321369 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
9 Hb_106528_010 0.0388421891 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
10 Hb_002551_010 0.04850251 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_011495_020 0.0563136408 - - Pectinesterase-2 precursor, putative [Ricinus communis]
12 Hb_000905_140 0.0565578593 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
13 Hb_000264_250 0.059336225 - - thioredoxin family protein [Arabidopsis thaliana]
14 Hb_000329_410 0.0622656683 - - Beta-expansin 3 precursor, putative [Ricinus communis]
15 Hb_001114_300 0.0640045891 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
16 Hb_000057_030 0.0684022899 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_122025_010 0.0685570257 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
18 Hb_002200_010 0.0688849147 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
19 Hb_000563_070 0.069840446 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
20 Hb_000286_250 0.0705879757 desease resistance Gene Name: NB-ARC -

Gene co-expression network

sample Hb_173102_010 Hb_173102_010 Hb_002997_010 Hb_002997_010 Hb_173102_010--Hb_002997_010 Hb_001114_290 Hb_001114_290 Hb_173102_010--Hb_001114_290 Hb_169426_010 Hb_169426_010 Hb_173102_010--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_173102_010--Hb_005780_010 Hb_180483_010 Hb_180483_010 Hb_173102_010--Hb_180483_010 Hb_008367_020 Hb_008367_020 Hb_173102_010--Hb_008367_020 Hb_002997_010--Hb_169426_010 Hb_002997_010--Hb_005780_010 Hb_002997_010--Hb_180483_010 Hb_002997_010--Hb_008367_020 Hb_002997_010--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_001114_290--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001114_290--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001114_290--Hb_002551_010 Hb_000264_250 Hb_000264_250 Hb_001114_290--Hb_000264_250 Hb_169426_010--Hb_005780_010 Hb_169426_010--Hb_180483_010 Hb_169426_010--Hb_008367_020 Hb_011495_020 Hb_011495_020 Hb_169426_010--Hb_011495_020 Hb_005780_010--Hb_180483_010 Hb_005780_010--Hb_008367_020 Hb_005780_010--Hb_011495_020 Hb_180483_010--Hb_011495_020 Hb_180483_010--Hb_008367_020 Hb_008367_020--Hb_001114_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.272032 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.53565 0

CAGE analysis