Hb_173387_010

Information

Type -
Description -
Location Contig173387: 5250-5804
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13190g
description hypothetical protein
nr
ID XP_006373375.1
description hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
swissprot
ID Q9FID8
description Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1
trembl
ID U5FP93
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s13190g PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173387_010 0.0 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
2 Hb_009522_020 0.0642482433 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
3 Hb_132840_170 0.0687155743 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
4 Hb_000958_090 0.0763292993 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
5 Hb_002713_060 0.0810374001 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
6 Hb_010222_060 0.0838823505 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_004835_020 0.0868612256 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
8 Hb_000120_480 0.0890389811 - - -
9 Hb_000395_230 0.0896307436 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Vitis vinifera]
10 Hb_102179_010 0.0900670332 - - protein binding protein, putative [Ricinus communis]
11 Hb_013394_120 0.0927816849 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
12 Hb_000271_130 0.1013341527 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
13 Hb_014700_030 0.1037512393 - - tryptophan synthase beta chain, putative [Ricinus communis]
14 Hb_001296_060 0.1052585982 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
15 Hb_005678_020 0.1073259044 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000329_440 0.1085260032 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
17 Hb_004979_070 0.1105297685 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
18 Hb_001098_040 0.111355237 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
19 Hb_025557_060 0.1116982469 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
20 Hb_005057_030 0.112579277 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_173387_010 Hb_173387_010 Hb_009522_020 Hb_009522_020 Hb_173387_010--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_173387_010--Hb_132840_170 Hb_000958_090 Hb_000958_090 Hb_173387_010--Hb_000958_090 Hb_002713_060 Hb_002713_060 Hb_173387_010--Hb_002713_060 Hb_010222_060 Hb_010222_060 Hb_173387_010--Hb_010222_060 Hb_004835_020 Hb_004835_020 Hb_173387_010--Hb_004835_020 Hb_009522_020--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_009522_020--Hb_013394_120 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_005183_100 Hb_005183_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_132840_170--Hb_013394_120 Hb_132840_170--Hb_010222_060 Hb_000815_090 Hb_000815_090 Hb_132840_170--Hb_000815_090 Hb_132840_170--Hb_009522_020 Hb_014700_030 Hb_014700_030 Hb_132840_170--Hb_014700_030 Hb_026549_060 Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_000424_140 Hb_000424_140 Hb_000958_090--Hb_000424_140 Hb_001047_210 Hb_001047_210 Hb_000958_090--Hb_001047_210 Hb_000958_090--Hb_004835_020 Hb_005569_010 Hb_005569_010 Hb_000958_090--Hb_005569_010 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_002713_060--Hb_010222_060 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_002713_060--Hb_009522_020 Hb_010222_060--Hb_013394_120 Hb_010222_060--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_010222_060--Hb_001789_120 Hb_102179_010 Hb_102179_010 Hb_004835_020--Hb_102179_010 Hb_004835_020--Hb_005569_010 Hb_000329_440 Hb_000329_440 Hb_004835_020--Hb_000329_440 Hb_000520_040 Hb_000520_040 Hb_004835_020--Hb_000520_040 Hb_004835_020--Hb_001047_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.75605 7.26035 11.179 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.773028 19.781

CAGE analysis