Hb_173741_010

Information

Type -
Description -
Location Contig173741: 784-1283
Sequence    

Annotation

kegg
ID mus:103994668
description caffeoyl-CoA O-methyltransferase isoform X1
nr
ID XP_009413347.1
description PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
swissprot
ID Q9SWB8
description Caffeoyl-CoA O-methyltransferase 2 OS=Eucalyptus globulus GN=CCOAOMT2 PE=2 SV=1
trembl
ID Q0P0M5
description Caffeoyl-CoA O-methyltransferase (Fragment) OS=Leucaena leucocephala GN=CCoAOMT PE=4 SV=1
Gene Ontology
ID GO:0042409
description caffeoyl- o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173741_010 0.0 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
2 Hb_003972_040 0.2079951216 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
3 Hb_001369_140 0.2145272474 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000589_210 0.2165188902 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
5 Hb_000080_080 0.2180459154 - - -
6 Hb_034280_010 0.2201076371 - - Protein bem46, putative [Ricinus communis]
7 Hb_000011_380 0.2312262305 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
8 Hb_009780_110 0.240486908 - - PREDICTED: protein RSI-1 [Cicer arietinum]
9 Hb_003090_230 0.242682852 - - conserved hypothetical protein [Ricinus communis]
10 Hb_014834_020 0.2445919192 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
11 Hb_003893_140 0.245332398 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
12 Hb_007545_140 0.2465359137 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
13 Hb_064122_010 0.2479800536 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
14 Hb_001863_200 0.251952458 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
15 Hb_002217_490 0.2579228374 - - -
16 Hb_025254_020 0.2595631149 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
17 Hb_000041_290 0.2608657039 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_002597_010 0.2625446007 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
19 Hb_032225_030 0.262828557 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
20 Hb_005854_050 0.2638311945 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_173741_010 Hb_173741_010 Hb_003972_040 Hb_003972_040 Hb_173741_010--Hb_003972_040 Hb_001369_140 Hb_001369_140 Hb_173741_010--Hb_001369_140 Hb_000589_210 Hb_000589_210 Hb_173741_010--Hb_000589_210 Hb_000080_080 Hb_000080_080 Hb_173741_010--Hb_000080_080 Hb_034280_010 Hb_034280_010 Hb_173741_010--Hb_034280_010 Hb_000011_380 Hb_000011_380 Hb_173741_010--Hb_000011_380 Hb_003972_040--Hb_034280_010 Hb_028115_010 Hb_028115_010 Hb_003972_040--Hb_028115_010 Hb_000413_230 Hb_000413_230 Hb_003972_040--Hb_000413_230 Hb_010872_040 Hb_010872_040 Hb_003972_040--Hb_010872_040 Hb_000679_200 Hb_000679_200 Hb_003972_040--Hb_000679_200 Hb_064122_010 Hb_064122_010 Hb_001369_140--Hb_064122_010 Hb_000380_210 Hb_000380_210 Hb_001369_140--Hb_000380_210 Hb_001369_140--Hb_000080_080 Hb_032225_030 Hb_032225_030 Hb_001369_140--Hb_032225_030 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_002597_010 Hb_002597_010 Hb_001369_140--Hb_002597_010 Hb_000589_210--Hb_002597_010 Hb_011214_120 Hb_011214_120 Hb_000589_210--Hb_011214_120 Hb_025254_020 Hb_025254_020 Hb_000589_210--Hb_025254_020 Hb_080147_060 Hb_080147_060 Hb_000589_210--Hb_080147_060 Hb_007545_140 Hb_007545_140 Hb_000589_210--Hb_007545_140 Hb_001959_030 Hb_001959_030 Hb_000589_210--Hb_001959_030 Hb_002217_490 Hb_002217_490 Hb_000080_080--Hb_002217_490 Hb_005672_030 Hb_005672_030 Hb_000080_080--Hb_005672_030 Hb_000676_130 Hb_000676_130 Hb_000080_080--Hb_000676_130 Hb_000041_290 Hb_000041_290 Hb_000080_080--Hb_000041_290 Hb_007403_040 Hb_007403_040 Hb_000080_080--Hb_007403_040 Hb_032208_050 Hb_032208_050 Hb_034280_010--Hb_032208_050 Hb_003050_100 Hb_003050_100 Hb_034280_010--Hb_003050_100 Hb_000032_430 Hb_000032_430 Hb_034280_010--Hb_000032_430 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380 Hb_007161_020 Hb_007161_020 Hb_000011_380--Hb_007161_020 Hb_039096_010 Hb_039096_010 Hb_000011_380--Hb_039096_010 Hb_113945_010 Hb_113945_010 Hb_000011_380--Hb_113945_010 Hb_000749_160 Hb_000749_160 Hb_000011_380--Hb_000749_160 Hb_000429_030 Hb_000429_030 Hb_000011_380--Hb_000429_030 Hb_000106_060 Hb_000106_060 Hb_000011_380--Hb_000106_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81071 1.1682 1.61658 14.6919 0.896382 1.87797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299908 0.235848 0.70149 15.506 0

CAGE analysis